RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 WDR59Q6PJI9 974 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 LCLAT1Q6UWP7 414 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 ZNF571Q7Z3V5 609 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 TMEM173Q86WV6 379 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 PASD1Q8IV76 773 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 SLC2A14Q8TDB8 520 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 MICAL1Q8TDZ2 1067 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 WHAMMQ8TF30 809 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 SLC20A1Q8WUM9 679 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 BCL7CQ8WUZ0 217 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 MYLPFQ96A32 169 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 TWNKQ96RR1 684 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 HNRNPABQ99729 332 aaKnown RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 PBX4Q9BYU1 374 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 ZCWPW1Q9H0M4 648 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 LHX5Q9H2C1 402 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 NGRNQ9NPE2 291 aaKnown RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 ABI2Q9NYB9 513 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 EHD2Q9NZN4 543 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 MAFFQ9ULX9 164 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 CDY1Q9Y6F8 540 aa11.86□□□□□ -0.51
SHMT2-220ENST00000555634 EPN1Q9Y6I3 576 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-220ENST00000555634 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.86□□□□□ -0.514e-7■■□□□ 12.3
SHMT2-220ENST00000555634 SPDYE4A6NLX3 237 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 KRT86O43790 486 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 RTN2O75298 545 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 AP1G2O75843 785 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 MICAL2O94851 1124 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 PLEKP08567 350 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-220ENST00000555634 H2AFZP0C0S5 128 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 GZMAP12544 262 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 NPR3P17342 541 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 LMO2P25791 158 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ACADSBP45954 432 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ERVK-21P61565 698 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 FMO1Q01740 532 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 KIF5AQ12840 1032 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 PLD1Q13393 1074 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 VEPH1Q14D04 833 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 IFI16Q16666 785 aaKnown RBP11.85□□□□□ -0.51
SHMT2-220ENST00000555634 CLEC16AQ2KHT3 1053 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 PPP1R26Q5T8A7 1209 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-220ENST00000555634 NAA35Q5VZE5 725 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 TPGS2Q68CL5 300 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 VSTM1Q6UX27 236 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 CD300LGQ6UXG3 332 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 H2AFVQ71UI9 128 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 FAM35AQ86V20 835 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 OSTM1Q86WC4 334 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ERICH1Q86X53 443 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 RNF168Q8IYW5 571 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-220ENST00000555634 SIX6OS1Q8N1H7 587 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ANKRD52Q8NB46 1076 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 OR10T2Q8NGX3 314 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 GOLGA1Q92805 767 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 TIFAQ96CG3 184 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 PCED1BQ96HM7 432 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 CALR3Q96L12 384 aaKnown RBP11.85□□□□□ -0.51
SHMT2-220ENST00000555634 B3GALT6Q96L58 329 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 CHP1Q99653 195 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 C17orf80Q9BSJ5 609 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 TRIM62Q9BVG3 475 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ZBP1Q9H171 429 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 NKX2-4Q9H2Z4 354 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ST7Q9NRC1 585 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 CHST7Q9NS84 486 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 SPTLC3Q9NUV7 552 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 FNIP2Q9P278 1114 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 NAGPAQ9UK23 515 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 GTF3C4Q9UKN8 822 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 SCINQ9Y6U3 715 aa11.85□□□□□ -0.51
SHMT2-220ENST00000555634 ZNF638Q14966 1978 aaKnown RBP11.85□□□□□ -0.51
SHMT2-220ENST00000555634 A0A087X0T9 212 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 GRXCR1A8MXD5 290 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 TMCO5BA8MYB1 307 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 PRRG1O14668 218 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 XPO1O14980 1071 aaKnown RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 SART1O43290 800 aaKnown RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 FAM228BP0C875 321 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 SRGAP2BP0DMP2 458 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 GRIK1P39086 918 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 RPL10AP62906 217 aaKnown RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 NOMO3P69849 1222 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 CENPCQ03188 943 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 TAP1Q03518 808 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 GPR17Q13304 367 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 GPM6BQ13491 265 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 TAF12Q16514 161 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 CFAP221Q4G0U5 840 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 PRPF38BQ5VTL8 546 aaKnown RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 PLPP4Q5VZY2 271 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 SLC8B1Q6J4K2 584 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 PRSS55Q6UWB4 352 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 TOGARAM2Q6ZUX3 1019 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 TMEM139Q8IV31 216 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 C12orf29Q8N999 325 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 C1orf131Q8NDD1 294 aaKnown RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 POF1BQ8WVV4 589 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 ARNTL2Q8WYA1 636 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 SECISBP2LQ93073 1101 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms