RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 WEE1P30291 646 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 PSMC2P35998 433 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 NUBP1P53384 320 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 PMS1P54277 932 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 CDH8P55286 799 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 NLRP12P59046 1061 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 STARD6P59095 220 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 RPL10AP62906 217 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 TNNC1P63316 161 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 PPP3CAQ08209 521 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SLC44A4Q53GD3 710 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 GPR158Q5T848 1215 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 INTS8Q75QN2 995 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SPATA2LQ8IUW3 424 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 ARID3BQ8IVW6 561 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 ZC3H3Q8IXZ2 948 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 FAM186BQ8IYM0 893 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 OR6B3Q8NGW1 331 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SMARCE1Q969G3 411 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 MYLPFQ96A32 169 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 MYRFLQ96LU7 910 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 LRRC3BQ96PB8 259 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 DDX23Q9BUQ8 820 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SNX25Q9H3E2 840 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 DPEP3Q9H4B8 488 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 TBC1D17Q9HA65 648 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SLC38A8A6NNN8 435 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 HEPACAM2A8MVW5 462 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 GALR2O43603 387 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 ASS1P00966 412 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 HLA-DRAP01903 254 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 TRIM49P0CI25 452 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 TRIM49CP0CI26 452 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 CSH1P0DML2 217 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 CSH2P0DML3 217 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 PTPN1P18031 435 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 BMP6P22004 513 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 BDNFP23560 247 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 CDC25CP30307 473 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 GCLMP48507 274 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 CYP4F8P98187 520 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 PFKPQ01813 784 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 GRM2Q14416 872 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 MAPRE1Q15691 268 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 MLF2Q15773 248 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 SGSM1Q2NKQ1 1148 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 ZNF699Q32M78 642 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 ZNF667Q5HYK9 610 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 MDH1BQ5I0G3 518 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 ANKRD40Q6AI12 368 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 SPOPLQ6IQ16 392 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 C4orf50Q6ZRC1 276 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 GPIHBP1Q8IV16 184 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 MFSD6LQ8IWD5 586 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 ADSSL1Q8N142 457 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 TAF4BQ92750 862 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 EEF2KMTQ96G04 330 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 PCED1BQ96HM7 432 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 PRRX2Q99811 253 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 TRMT61BQ9BVS5 477 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 SLC46A2Q9BY10 475 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 SLITRK6Q9H5Y7 841 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 TASP1Q9H6P5 420 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 APOBEC3GQ9HC16 384 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 CHMP5Q9NZZ3 219 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 MAGEC2Q9UBF1 373 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 MAN1B1Q9UKM7 699 aa10.97□□□□□ -0.65
CCDC88C-206ENST00000553437 A8MXQ7 604 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 ARNTLO00327 626 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 CETN3O15182 167 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 LRRN2O75325 713 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 TADA3O75528 432 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 PRAMEF12O95522 483 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 KRT13P13646 458 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 PSMC3P17980 439 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 ASPAP45381 313 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 RAP1GAPP47736 663 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 CACNA2D1P54289 1103 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 PTPN5P54829 565 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 NHLH1Q02575 133 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 PRKCQQ04759 706 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 FCHO2Q0JRZ9 810 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 TAF12Q16514 161 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 ARHGAP15Q53QZ3 475 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 ISM2Q6H9L7 571 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 VSTM1Q6UX27 236 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 SCN4BQ8IWT1 228 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 CCDC105Q8IYK2 499 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 TAS1R2Q8TE23 839 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 DEPDC1BQ8WUY9 529 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 E2F7Q96AV8 911 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 TRMT2BQ96GJ1 504 aaKnown RBP10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 SPATA17Q96L03 361 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 B3GNT5Q9BYG0 378 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 GTPBP4Q9BZE4 634 aaKnown RBP10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 FOXQ1Q9C009 403 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 ZNF518BQ9C0D4 1074 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 TRPV5Q9NQA5 729 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 TMEM30AQ9NV96 361 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 DLGAP2Q9P1A6 1054 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms