RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 C12orf56Q8IXR9 622 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 CMTM8Q8IZV2 173 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 ADSSL1Q8N142 457 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 ZNF687Q8N1G0 1237 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 MAB21L3Q8N8X9 362 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 KIAA0895Q8NCT3 520 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 BPIFB1Q8TDL5 484 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 FBXO4Q9UKT5 387 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 FANCMQ8IYD8 2048 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 OBSL1O75147 1896 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 ZNF638Q14966 1978 aaKnown RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 LMNAP02545 664 aaKnown RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 PDGFRBP09619 1106 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 WARSP23381 471 aaKnown RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 WEE1P30291 646 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 AVPR1AP37288 418 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 CASP4P49662 377 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 MTAPQ13126 283 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 CFAP221Q4G0U5 840 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 TXNDC8Q6A555 127 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 FAM171BQ6P995 826 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 C4orf50Q6ZRC1 276 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 CELF5Q8N6W0 485 aaKnown RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 GOLGA5Q8TBA6 731 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 ZNF516Q92618 1163 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 MRPS31Q92665 395 aaKnown RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 MYLPFQ96A32 169 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 FUBP3Q96I24 572 aaKnown RBP eCLIP17.48■□□□□ 0.39
VPS29-207ENST00000549970 MRPL45Q9BRJ2 306 aaKnown RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 GZF1Q9H116 711 aaPredicted RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 SEMA4AQ9H3S1 761 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 LMAN1LQ9HAT1 526 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 CRTAC1Q9NQ79 661 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 GTSE1Q9NYZ3 720 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 UXTQ9UBK9 157 aaPredicted RBP17.48■□□□□ 0.39
VPS29-207ENST00000549970 ZMYM5Q9UJ78 669 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 CDH9Q9ULB4 789 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 HPSEQ9Y251 543 aa17.48■□□□□ 0.39
VPS29-207ENST00000549970 TADA3O75528 432 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 NOL4O94818 638 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 DDX6P26196 483 aaKnown RBP eCLIP17.47■□□□□ 0.39
VPS29-207ENST00000549970 SYKP43405 635 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 TNNC1P63316 161 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 TNK2Q07912 1038 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 TRPC3Q13507 836 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 WDR72Q3MJ13 1102 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 TSSK4Q6SA08 328 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 PLEKHO2Q8TD55 490 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 MSANTD3Q96H12 275 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 CHRDQ9H2X0 955 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 SNX25Q9H3E2 840 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 C8orf33Q9H7E9 229 aaPredicted RBP17.47■□□□□ 0.39
VPS29-207ENST00000549970 MAGEC2Q9UBF1 373 aaPredicted RBP17.47■□□□□ 0.39
VPS29-207ENST00000549970 USP25Q9UHP3 1055 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 CCL26Q9Y258 94 aa17.47■□□□□ 0.39
VPS29-207ENST00000549970 SPECC1L-ADORA2AF8WAN1 911 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 PHACTR2O75167 634 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 CLSTN1O94985 981 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 BDNFP23560 247 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 CTHP32929 405 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 NDUFA8P51970 172 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 MLLT6P55198 1093 aaPredicted RBP17.46■□□□□ 0.39
VPS29-207ENST00000549970 MYL6P60660 151 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 PLCB2Q00722 1185 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 CYP27A1Q02318 531 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 PSMD2Q13200 908 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 BIRC3Q13489 604 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 ZNF528Q3MIS6 628 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 OR6B3Q8NGW1 331 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 USP13Q92995 863 aaPredicted RBP17.46■□□□□ 0.39
VPS29-207ENST00000549970 TRMT2BQ96GJ1 504 aaKnown RBP17.46■□□□□ 0.39
VPS29-207ENST00000549970 TRPC7Q9HCX4 862 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 THG1LQ9NWX6 298 aaKnown RBP17.46■□□□□ 0.39
VPS29-207ENST00000549970 NXF1Q9UBU9 619 aaKnown RBP17.46■□□□□ 0.39
VPS29-207ENST00000549970 NME7Q9Y5B8 376 aa17.46■□□□□ 0.39
VPS29-207ENST00000549970 KIF26AQ9ULI4 1882 aaPredicted RBP17.46■□□□□ 0.38
VPS29-207ENST00000549970 KINO60870 393 aaKnown RBP17.45■□□□□ 0.38
VPS29-207ENST00000549970 MYL1P05976 194 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 PRR29P0C7W0 189 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 CHRNB1P11230 501 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 GNL1P36915 607 aaPredicted RBP17.45■□□□□ 0.38
VPS29-207ENST00000549970 GRIK1P39086 918 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 MAGEA11P43364 429 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 MAPRE1Q15691 268 aaKnown RBP17.45■□□□□ 0.38
VPS29-207ENST00000549970 MDH1BQ5I0G3 518 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 TDRD10Q5VZ19 366 aaKnown RBP17.45■□□□□ 0.38
VPS29-207ENST00000549970 C1orf228Q6PIY5 440 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 TXNDC11Q6PKC3 985 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 MON1AQ86VX9 555 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 FSIP1Q8NA03 581 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 PCED1BQ96HM7 432 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 MYRFLQ96LU7 910 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 PRMT8Q9NR22 394 aaPredicted RBP17.45■□□□□ 0.38
VPS29-207ENST00000549970 RBM12Q9NTZ6 932 aaKnown RBP17.45■□□□□ 0.38
VPS29-207ENST00000549970 TDP1Q9NUW8 608 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 ATP6V1DQ9Y5K8 247 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 PTPRDP23468 1912 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 FRYLO94915 3013 aa17.45■□□□□ 0.38
VPS29-207ENST00000549970 LRRIQ3A6PVS8 624 aaPredicted RBP17.44■□□□□ 0.38
VPS29-207ENST00000549970 TACC1O75410 805 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms