RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PRDM16Q9HAZ2 1276 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 PDGFCQ9NRA1 345 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 SENP1Q9P0U3 644 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 TPX2Q9ULW0 747 aaKnown RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 A0A087WZ62 844 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 C3orf70A6NLC5 250 aaPredicted RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 O00370 1275 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 TSPAN1O60635 241 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 TOMM70O94826 608 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ENDOD1O94919 500 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 NFICP08651 508 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 DESP17661 470 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ARF4P18085 180 aaPredicted RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 FGFR4P22455 802 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 MYO1EQ12965 1108 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 MKRN3Q13064 507 aaKnown RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 SNX1Q13596 522 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 DGKDQ16760 1214 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 FAM110CQ1W6H9 321 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 SLC10A6Q3KNW5 377 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ILDR2Q71H61 639 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 UNC93AQ86WB7 457 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ATXN2LQ8WWM7 1075 aaKnown RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 PARK7Q99497 189 aaKnown RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 FDXACB1Q9BRP7 624 aaPredicted RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 FRMD8Q9BZ67 464 aaPredicted RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 ADAM7Q9H2U9 754 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 NINJ2Q9NZG7 142 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 AKT3Q9Y243 479 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 USTQ9Y2C2 406 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 H3BRB1 525 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 PDHXO00330 501 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 LRCH4O75427 683 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 RNF8O76064 485 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 MICAL2O94851 1124 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 FSBPO95073 299 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ITGB3P05106 788 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 MMP3P08254 477 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 GPD2P43304 727 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 PSMC1P62191 440 aaKnown RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 OGDHQ02218 1023 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ITIH4Q14624 930 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 GRIK4Q16099 956 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 NBPF20Q3BBV1 942 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 WDR72Q3MJ13 1102 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ZC3H12AQ5D1E8 599 aaKnown RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 FAM47CQ5HY64 1035 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 C4orf22Q6V702 233 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 TRAPPC12Q8WVT3 735 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 TEKT4Q8WW24 435 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 ATG4AQ8WYN0 398 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 HPDLQ96IR7 371 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 TBCBQ99426 244 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 PLCD4Q9BRC7 762 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 CNPY3Q9BT09 278 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 R3HDMLQ9H3Y0 253 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 TUT1Q9H6E5 874 aaKnown RBP10.38□□□□□ -0.75
SS18-205ENST00000542420 RSAD1Q9HA92 442 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 EURLQ9NYK6 297 aa10.38□□□□□ -0.75
SS18-205ENST00000542420 SMIM35A0A1B0GVV1 85 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 F8VP50 259 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 ZNF189O75820 626 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 SNAI1O95863 264 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 IQCF3P0C7M6 154 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 GHRP10912 638 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 CD19P15391 556 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 ATF7P17544 494 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 DRD4P21917 467 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 KDELR1P24390 212 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 SSR1P43307 286 aaKnown RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 ZNF143P52747 638 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 C11orf91Q3C1V1 193 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 GKAP1Q5VSY0 366 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 LLGL2Q6P1M3 1020 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 GSTA5Q7RTV2 222 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 RNF217Q8TC41 542 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 ZNF317Q96PQ6 595 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 NT5C1AQ9BXI3 368 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 GCOM2Q9BZD3 368 aaPredicted RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 ELOVL4Q9GZR5 314 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 SDCBP2Q9H190 292 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 INTS9Q9NV88 658 aaKnown RBP10.37□□□□□ -0.75
SS18-205ENST00000542420 DPP3Q9NY33 737 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 POLIQ9UNA4 740 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 TRPM7Q96QT4 1865 aa10.37□□□□□ -0.75
SS18-205ENST00000542420 CFAP69A5D8W1 941 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 APOC4-APOC2K7ER74 178 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 ALOX15BO15296 676 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 XPOTO43592 962 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 APOC2P02655 101 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 KRT19P08727 400 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CHN1P15882 459 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 RFC1P35251 1148 aaPredicted RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 CHKAP35790 457 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 TFDP2Q14188 446 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 PDK2Q15119 407 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 RNASEH2BQ5TBB1 312 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 ARHGAP17Q68EM7 881 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 MOB2Q70IA6 237 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms