RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ZNF813Q6ZN06 617 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 C18orf65Q6ZTR6 163 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 LRRC71Q8N4P6 559 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 RP9Q8TA86 221 aaKnown RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 CUL5Q93034 780 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 HDAC10Q969S8 669 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 THOC3Q96J01 351 aaKnown RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 CLPTM1LQ96KA5 538 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 DMRTA2Q96SC8 542 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 GPR35Q9HC97 309 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 RLIMQ9NVW2 624 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 SIDT1Q9NXL6 827 aaKnown RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 WASHC2CQ9Y4E1 1318 aa3.21□□□□□ -1.89
SKA3-207ENST00000536239 EME2A4GXA9 379 aaPredicted RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 F2RL2O00254 374 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 KIF20AO95235 890 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 CRYABP02511 175 aaKnown RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 GJB1P08034 283 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 CYP2C19P33261 490 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 ZNF135P52742 658 aaPredicted RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 SP2Q02086 613 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 GHRHRQ02643 423 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 TCF15Q12870 199 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 TBC1D25Q3MII6 688 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 ICE2Q659A1 982 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 SFRP4Q6FHJ7 346 aaPredicted RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 KIRREL2Q6UWL6 708 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 PIP4P1Q86T03 277 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 UBR7Q8N806 425 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 IPO4Q8TEX9 1081 aaKnown RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 POT1Q9NUX5 634 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 NAP1L2Q9ULW6 460 aaPredicted RBP3.21□□□□□ -1.9
SKA3-207ENST00000536239 AGAP1Q9UPQ3 857 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 ICKQ9UPZ9 632 aa3.21□□□□□ -1.9
SKA3-207ENST00000536239 WASHC2AQ641Q2 1341 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 CENPJQ9HC77 1338 aaPredicted RBP3.2□□□□□ -1.9
SKA3-207ENST00000536239 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 PRSS29PA6NIE9 313 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 UBE2Q2LH0YL09 131 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 H3BNX3 289 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 FZD9O00144 591 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 FESP07332 822 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 GNAI3P08754 354 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 GNAI1P63096 354 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 TMPRSS15P98073 1019 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 RHDQ02161 417 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 CALD1Q05682 793 aaKnown RBP3.2□□□□□ -1.9
SKA3-207ENST00000536239 IL10RAQ13651 578 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 ZNF268Q14587 947 aaPredicted RBP3.2□□□□□ -1.9
SKA3-207ENST00000536239 TMEM108Q6UXF1 575 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 Q6ZWC4 215 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.2□□□□□ -1.9
SKA3-207ENST00000536239 TERB1Q8NA31 727 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 SREK1Q8WXA9 508 aaKnown RBP3.2□□□□□ -1.9
SKA3-207ENST00000536239 SNX18Q96RF0 628 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 THAP7Q9BT49 309 aaPredicted RBP3.2□□□□□ -1.9
SKA3-207ENST00000536239 SIK2Q9H0K1 926 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 TXLNGQ9NUQ3 528 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 CFAP97Q9P2B7 532 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 NOP58Q9Y2X3 529 aaKnown RBP3.2□□□□□ -1.9
SKA3-207ENST00000536239 SQORQ9Y6N5 450 aa3.2□□□□□ -1.9
SKA3-207ENST00000536239 EXOC3O60645 756 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 PRKD3O94806 890 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 TJP3O95049 919 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 PDE8BO95263 885 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 TOMM40O96008 361 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 A1BGP04217 495 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 T-ENOLP0DO92 83 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 PSG1P11464 419 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 KRTAP10-5P60370 271 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 GPSM2P81274 684 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 SRSF1Q07955 248 aaKnown RBP eCLIP3.19□□□□□ -1.9
SKA3-207ENST00000536239 FHL3Q13643 280 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 BOP1Q14137 746 aaKnown RBP3.19□□□□□ -1.9
SKA3-207ENST00000536239 STAT4Q14765 748 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 PPP4R3AQ6IN85 833 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 SERPINA13PQ6UXR4 307 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 PPP1R32Q7Z5V6 425 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 ADHFE1Q8IWW8 467 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 ABHD11Q8NFV4 315 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 MAN1C1Q9NR34 630 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 GNL3LQ9NVN8 582 aaKnown RBP3.19□□□□□ -1.9
SKA3-207ENST00000536239 TUBD1Q9UJT1 453 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 IPPQ9Y573 584 aa3.19□□□□□ -1.9
SKA3-207ENST00000536239 ZMYM2Q9UBW7 1377 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 TCRBV5S1A1TA0A578 114 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 A1L4Q6 167 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 NT5C1B-RDH14C9J2C7 533 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 HMGB1P09429 215 aaKnown RBP3.18□□□□□ -1.9
SKA3-207ENST00000536239 RARBP10826 455 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 MALP21145 153 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 CDKN2AP42771 156 aaKnown RBP3.18□□□□□ -1.9
SKA3-207ENST00000536239 RENBPP51606 427 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 ERVK-21P61565 698 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 SNAPC2Q13487 334 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 KHDC1Q4VXA5 237 aaKnown RBP3.18□□□□□ -1.9
SKA3-207ENST00000536239 LVRNQ6Q4G3 990 aa3.18□□□□□ -1.9
SKA3-207ENST00000536239 PIM3Q86V86 326 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms