RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SLITRK6Q9H5Y7 841 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 PDLIM7Q9NR12 457 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 TCP11L1Q9NUJ3 509 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 MBNL3Q9NUK0 354 aaKnown RBP7.07□□□□□ -1.28
USP28-202ENST00000535607 HAUS2Q9NVX0 235 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 ETAA1Q9NY74 926 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP28-202ENST00000535607 DBR1Q9UK59 544 aaKnown RBP7.07□□□□□ -1.28
USP28-202ENST00000535607 UTP11Q9Y3A2 253 aaKnown RBP7.07□□□□□ -1.28
USP28-202ENST00000535607 NUB1Q9Y5A7 615 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 PCDHA9Q9Y5H5 950 aa7.07□□□□□ -1.28
USP28-202ENST00000535607 DOCK2Q92608 1830 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 ATP8B3O60423 1300 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 BTNL10A8MVZ5 291 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 H7BY64 318 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 MAFKO60675 156 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 DGKIO75912 1065 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 RASGRP1O95267 797 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 MOCS3O95396 460 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 GNA14O95837 355 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 HPXP02790 462 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SOD2P04179 222 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SRGAP2CP0DJJ0 459 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 FERP16591 822 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 CPEP16870 476 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 GUCY2FP51841 1108 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SPIRE1Q08AE8 756 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 DYNC1I2Q13409 638 aaKnown RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 ORC2Q13416 577 aaPredicted RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 BYSLQ13895 437 aaKnown RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 E2F5Q15329 346 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 RPS6KA1Q15418 735 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 MAN2A1Q16706 1144 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 CAVIN4Q5BKX8 364 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 HIBCHQ6NVY1 386 aaPredicted RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 NFRKBQ6P4R8 1299 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 VPS36Q86VN1 386 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 TBC1D10CQ8IV04 446 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 MFN1Q8IWA4 741 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SYCE1Q8N0S2 351 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SH2D3CQ8N5H7 860 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 TTLL6Q8N841 843 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 TMEM52Q8NDY8 209 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SUPT20HQ8NEM7 779 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 NUP133Q8WUM0 1156 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 UBLCP1Q8WVY7 318 aaPredicted RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 CCT6BQ92526 530 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 CNOT6LQ96LI5 555 aaKnown RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 CLUHP3Q96NS8 147 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 KRT12Q99456 494 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 FAM129AQ9BZQ8 928 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 TTYH3Q9C0H2 523 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 TAOK3Q9H2K8 898 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 VCXQ9H320 206 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 SH3GLB2Q9NR46 395 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 CATSPERZQ9NTU4 200 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 RBM12Q9NTZ6 932 aaKnown RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 CTNNAL1Q9UBT7 734 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 RASAL2Q9UJF2 1139 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 NUDT5Q9UKK9 219 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 BZW2Q9Y6E2 419 aaKnown RBP7.06□□□□□ -1.28
USP28-202ENST00000535607 SLX4Q8IY92 1834 aa7.06□□□□□ -1.28
USP28-202ENST00000535607 IRS2Q9Y4H2 1338 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 A0A0G2JLW4 131 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 LRRD1A4D1F6 860 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 C22orf46C9J442 243 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 PGRMC1O00264 195 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 KRIT1O00522 736 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 PPIP5K2O43314 1243 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 IDH1O75874 414 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 SUN1O94901 812 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 NPTXRO95502 500 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ANP32DO95626 131 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 LMNAP02545 664 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 TFRCP02786 760 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 FESP07332 822 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 RPSAP08865 295 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 SETSIPP0DME0 302 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 PDHBP11177 359 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 GNAT1P11488 350 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 PECAM1P16284 738 aaPredicted RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 PDE6AP16499 860 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 RXRAP19793 462 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 TACR1P25103 407 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 CDC25AP30304 524 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 HSD17B3P37058 310 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 CARSP49589 748 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 PDE6CP51160 858 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 SEC24CP53992 1094 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 NLRP5P59047 1200 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 MRPS35P82673 323 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 GRIN1Q05586 938 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 LRRC63Q05C16 580 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ZNF268Q14587 947 aaPredicted RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 ZNF174Q15697 407 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 NAB2Q15742 525 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 KRT71Q3SY84 523 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 TM4SF20Q53R12 229 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 CCDC178Q5BJE1 867 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms