RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 NXPH3O95157 252 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 ERBB2P04626 1255 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 PRKCGP05129 697 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 PDGFRBP09619 1106 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 ATXN1LP0C7T5 689 aaKnown RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 PCSK6P29122 969 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 LIPAP38571 399 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 PXNP49023 591 aaPredicted RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 RAB27AP51159 221 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 CLCN2P51788 898 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 LOXL3P58215 753 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 RAB1AP62820 205 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 IGBP1P78318 339 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 TFF2Q03403 129 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 MCL1Q07820 350 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 PIN1Q13526 163 aaPredicted RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 FGL2Q14314 439 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 TREML2Q5T2D2 321 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 ZNF618Q5T7W0 954 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 MAVSQ7Z434 540 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 TPH2Q8IWU9 490 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 HASPINQ8TF76 798 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 JPH3Q8WXH2 748 aaPredicted RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 PTDSS2Q9BVG9 487 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 SLC29A3Q9BZD2 475 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 CNNM1Q9NRU3 951 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 TYW1Q9NV66 732 aaKnown RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 XPR1Q9UBH6 696 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 PNMA8BQ9ULN7 279 aaPredicted RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 SSX2IPQ9Y2D8 614 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 SETD1BQ9UPS6 1966 aaKnown RBP2.97□□□□□ -1.93
CD44-216ENST00000525293 A0A088AWK7 358 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 hCG_1984214I3L0E3 225 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 SLC16A3O15427 465 aaKnown RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 AKAP10O43572 662 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 FESP07332 822 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 IL6RP08887 468 aaPredicted RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 HSPA6P17066 643 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 CYP2C18P33260 490 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 PDE1AP54750 535 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 UCP3P55916 312 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 GRM1Q13255 1194 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 E2F2Q14209 437 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 TEDDM1Q5T9Z0 273 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 SUMO4Q6EEV6 95 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 RGS7BPQ6MZT1 257 aaPredicted RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 ZNF280BQ86YH2 543 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 DENND1CQ8IV53 801 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 FANCBQ8NB91 859 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 PPP1R35Q8TAP8 253 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 SLC35G2Q8TBE7 412 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 ATG4AQ8WYN0 398 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 EVI5LQ96CN4 794 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 MRGPRX1Q96LB2 322 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 MOGAT1Q96PD6 335 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 P2RX7Q99572 595 aaKnown RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 ACO2Q99798 780 aaKnown RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 RTFDC1Q9BY42 306 aaPredicted RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 PIH1D1Q9NWS0 290 aaKnown RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 DLL3Q9NYJ7 618 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 SH3BP4Q9P0V3 963 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 SERGEFQ9UGK8 458 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 NDRG4Q9ULP0 352 aaKnown RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 MRPS17Q9Y2R5 130 aaKnown RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 TMX2Q9Y320 296 aa2.96□□□□□ -1.94
CD44-216ENST00000525293 COL3A1P02461 1466 aaPredicted RBP2.96□□□□□ -1.94
CD44-216ENST00000525293 FNDC1Q4ZHG4 1894 aaPredicted RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 E2F8A0AVK6 867 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 A1L4Q6 167 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 LINC01548A6NM66 108 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 H0YIZ8 118 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 INO80B-WBP1J3KQ70 363 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 MYO1CO00159 1063 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 QSOX1O00391 747 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 ZNF213O14771 459 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 JTBO76095 146 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 UBXN7O94888 489 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 THP07101 528 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 CELA2AP08217 269 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 MYBP10242 640 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 ENGP17813 658 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 HTR1BP28222 390 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 PPIFP30405 207 aaKnown RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 VIPR2P41587 438 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 SLC11A2P49281 568 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 EEFSECP57772 596 aaKnown RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 FAM193AP78312 1265 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 HNRNPA0Q13151 305 aaKnown RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 SRSF7Q16629 238 aaKnown RBP eCLIP2.95□□□□□ -1.94
CD44-216ENST00000525293 GLIPR1L2Q4G1C9 344 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 AARS2Q5JTZ9 985 aaKnown RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 PCID2Q5JVF3 399 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 CEP85Q6P2H3 762 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 ANKRD16Q6P6B7 361 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 ZNF782Q6ZMW2 699 aaPredicted RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 SLC29A4Q7RTT9 530 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 WDR53Q7Z5U6 358 aaPredicted RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 DAAM2Q86T65 1068 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 LRRC71Q8N4P6 559 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 SLC15A4Q8N697 577 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms