RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CACNA2D1P54289 1103 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 SMARCB1Q12824 385 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 ZACNQ401N2 412 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 ZNF667Q5HYK9 610 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 ZNF658Q5TYW1 1059 aaPredicted RBP12.28□□□□□ -0.44
VCAN-212ENST00000515397 TXNDC8Q6A555 127 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 KLHL10Q6JEL2 608 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 LEMD2Q8NC56 503 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 TTC16Q8NEE8 873 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 TMC2Q8TDI7 906 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 TAS1R2Q8TE23 839 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 C2orf15Q8WU43 125 aaKnown RBP12.28□□□□□ -0.44
VCAN-212ENST00000515397 SYAP1Q96A49 352 aaPredicted RBP12.28□□□□□ -0.44
VCAN-212ENST00000515397 ELSPBP1Q96BH3 223 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 CCDC34Q96HJ3 373 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 PCED1BQ96HM7 432 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 ZFYVE19Q96K21 471 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 SLC46A2Q9BY10 475 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 BRD9Q9H8M2 597 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 TMEM30AQ9NV96 361 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 CHMP5Q9NZZ3 219 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 MAN1B1Q9UKM7 699 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 CIZ1Q9ULV3 898 aaPredicted RBP12.28□□□□□ -0.44
VCAN-212ENST00000515397 KINO60870 393 aaKnown RBP12.27□□□□□ -0.45
VCAN-212ENST00000515397 TACC1O75410 805 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 PRAMEF12O95522 483 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 F11P03951 625 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 KRT13P13646 458 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 BMP6P22004 513 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 RPL13P26373 211 aaKnown RBP12.27□□□□□ -0.45
VCAN-212ENST00000515397 PSMC2P35998 433 aaKnown RBP12.27□□□□□ -0.45
VCAN-212ENST00000515397 PIK3CAP42336 1068 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 NHLH1Q02575 133 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 CAMK4Q16566 473 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 ACOT1Q86TX2 421 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 MAB21L3Q8N8X9 362 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 SPATA20Q8TB22 786 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 TMEM174Q8WUU8 243 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 TIGD1Q96MW7 591 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 GSDMAQ96QA5 445 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 CYP2S1Q96SQ9 504 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 TRMT61BQ9BVS5 477 aaKnown RBP12.27□□□□□ -0.45
VCAN-212ENST00000515397 B3GNT5Q9BYG0 378 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 ZNF518BQ9C0D4 1074 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 APOBEC3GQ9HC16 384 aaKnown RBP12.27□□□□□ -0.45
VCAN-212ENST00000515397 RMND1Q9NWS8 449 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 HSFX1Q9UBD0 423 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 HMGXB4Q9UGU5 601 aa12.27□□□□□ -0.45
VCAN-212ENST00000515397 F8VP50 259 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 CETN3O15182 167 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 CSH1P0DML2 217 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 CSH2P0DML3 217 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 GLULP15104 373 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 AOC1P19801 751 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 SOX9P48436 509 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 CLCN5P51795 746 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 AP3M2P53677 418 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 STX17P56962 302 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 NLRP12P59046 1061 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 USP46P62068 366 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 RPL10AP62906 217 aaKnown RBP12.26□□□□□ -0.45
VCAN-212ENST00000515397 IFRD2Q12894 506 aaPredicted RBP12.26□□□□□ -0.45
VCAN-212ENST00000515397 UBXN2BQ14CS0 331 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 MLF2Q15773 248 aaPredicted RBP12.26□□□□□ -0.45
VCAN-212ENST00000515397 SGSM1Q2NKQ1 1148 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 ARHGAP15Q53QZ3 475 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 C4orf50Q6ZRC1 276 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 TPRG1Q6ZUI0 275 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 INTS8Q75QN2 995 aaKnown RBP12.26□□□□□ -0.45
VCAN-212ENST00000515397 MFSD6LQ8IWD5 586 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 ADSSL1Q8N142 457 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 B3GALNT2Q8NCR0 500 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 MYCBPAPQ8TBZ2 947 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 SEMA4DQ92854 862 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 GCNAQ96QF7 691 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 MED10Q9BTT4 135 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 TASP1Q9H6P5 420 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 TRPC7Q9HCX4 862 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 ABCB6Q9NP58 842 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 CCL26Q9Y258 94 aa12.26□□□□□ -0.45
VCAN-212ENST00000515397 ZFHX2Q9C0A1 2572 aaPredicted RBP12.25□□□□□ -0.45
VCAN-212ENST00000515397 SHISA7A6NL88 538 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 FAM170BA6NMN3 283 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 DPYSL4O14531 572 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 IKBKBO14920 756 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 ZNF263O14978 683 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 TADA3O75528 432 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 STAU1O95793 577 aaKnown RBP12.25□□□□□ -0.45
VCAN-212ENST00000515397 ASS1P00966 412 aaKnown RBP12.25□□□□□ -0.45
VCAN-212ENST00000515397 PSMC3P17980 439 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 CD58P19256 250 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 CDC25CP30307 473 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 HOXD11P31277 338 aaPredicted RBP12.25□□□□□ -0.45
VCAN-212ENST00000515397 ANP32AP39687 249 aaKnown RBP12.25□□□□□ -0.45
VCAN-212ENST00000515397 NDST1P52848 882 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 TNK2Q07912 1038 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 NFIL3Q16649 462 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 CFAP221Q4G0U5 840 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 TCERG1LQ5VWI1 586 aa12.25□□□□□ -0.45
VCAN-212ENST00000515397 PAQR9Q6ZVX9 377 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms