RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 USP17L18D6R9N7 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L22D6RA61 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L17D6RBQ6 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L19D6RCP7 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L20D6RJB6 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 FOXP2O15409 715 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PHGDHO43175 533 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 AP5Z1O43299 807 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 RAD51CO43502 376 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 SNX2O60749 519 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 CPA2P48052 419 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PURAQ00577 322 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L24Q0WX57 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 MTM1Q13496 603 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 NKX1-1Q15270 411 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TRADDQ15628 312 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 FASTKD1Q53R41 847 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L6PQ6QN14 398 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 KDM7AQ6ZMT4 941 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PRR23BQ6ZRT6 265 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 NYAP1Q6ZVC0 841 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 NUP93Q8N1F7 819 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 GLT1D1Q96MS3 346 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 FUT8Q9BYC5 575 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 WNT8AQ9H1J5 351 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC9A2Q9UBY0 812 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 CNOT7Q9UIV1 285 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 SUGT1Q9Y2Z0 365 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 NEMP1O14524 444 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 MAP3K13O43283 966 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 ADCY6O43306 1168 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 SRP72O76094 671 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 CYP2D6P10635 497 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TTKP33981 857 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 GRSF1Q12849 480 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 FAPQ12884 760 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PDXDC2PQ6P474 469 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 KRT77Q7Z794 578 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 RHOT1Q8IXI2 618 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 SP8Q8IXZ3 490 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 MB21D2Q8IYB1 491 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 RIN3Q8TB24 985 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PNKPQ96T60 521 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 KLF6Q99612 283 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 DLG5Q8TDM6 1919 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TECPR2O15040 1411 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 IL6P05231 212 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 GHRP10912 638 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TCN1P20061 433 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 ATP12AP54707 1039 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USF2Q15853 346 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF667Q5HYK9 610 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 WASHC2DQ5SRD0 308 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PPP4R4Q6NUP7 873 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 POTEGQ6S5H5 508 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 ANKRD13AQ8IZ07 590 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 DIS3LQ8TF46 1054 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 RMND5BQ96G75 393 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 PLEKHA8Q96JA3 519 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 RBM15Q96T37 977 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 INTS2Q9H0H0 1204 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 LY9Q9HBG7 655 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 MAP3K20Q9NYL2 800 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 KLHL3Q9UH77 587 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 WDR37Q9Y2I8 494 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 STK36Q9NRP7 1315 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 LOC100653049A0A140TA62 436 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 MYO1GB0I1T2 1018 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 MATN2O00339 956 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 BNIP3LO60238 219 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 KRT34O76011 436 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 STAG3L1P0CL83 205 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 PSMA3P25788 255 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SSTR3P32745 418 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CDK8P49336 464 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 COPAP53621 1224 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 BCAR1P56945 870 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 COX10Q12887 443 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SYDE2Q5VT97 1194 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ARHGEF19Q8IW93 802 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 PEX5LQ8IYB4 626 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 OR6B3Q8NGW1 331 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 JADE3Q92613 823 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 GBA2Q9HCG7 927 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 METTL5Q9NRN9 209 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ADARB2Q9NS39 739 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 IMPAD1Q9NX62 359 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 FHOD1Q9Y613 1164 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SMIM31A0A1B0GVY4 71 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L10C9JJH3 530 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 VWA5AO00534 786 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SOX11P35716 441 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 NR1I3Q14994 352 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC18A3Q16572 532 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ATP13A5Q4VNC0 1218 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SZRD1Q7Z422 152 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 PRPF39Q86UA1 669 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM213AQ9BRX8 229 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CELF4Q9BZC1 486 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 C6orf62Q9GZU0 229 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms