RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 SERPINA13PQ6UXR4 307 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 MAVSQ7Z434 540 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 USP37Q86T82 979 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 SMRP1Q8NCR6 262 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 NSUN6Q8TEA1 469 aaKnown RBP3.77□□□□□ -1.81
NUP54-208ENST00000508604 TFCP2L1Q9NZI6 479 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 ZDHHC8Q9ULC8 765 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 PRR23D1E9PI22 279 aaPredicted RBP3.76□□□□□ -1.81
NUP54-208ENST00000508604 M0QYG6 137 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 FESP07332 822 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 PRR23D2P0DMB1 279 aaPredicted RBP3.76□□□□□ -1.81
NUP54-208ENST00000508604 HSD3B2P26439 372 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 PHKA1P46020 1223 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 SATB1Q01826 763 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 UAP1L1Q3KQV9 507 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 FAM160B1Q5W0V3 765 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 MTHFD1LQ6UB35 978 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 CPA6Q8N4T0 437 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 C3orf20Q8ND61 904 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 C16orf52Q8NHV5 167 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 XAGE5Q8WWM1 108 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 TNPO1Q92973 898 aaKnown RBP3.76□□□□□ -1.81
NUP54-208ENST00000508604 DMRTA2Q96SC8 542 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 PUS7LQ9H0K6 701 aaKnown RBP3.76□□□□□ -1.81
NUP54-208ENST00000508604 KLHL13Q9P2N7 655 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 PI4KBQ9UBF8 816 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 ZNF112Q9UJU3 913 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 SERTAD3Q9UJW9 196 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 TBX22Q9Y458 520 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 LRP12Q9Y561 859 aa3.76□□□□□ -1.81
NUP54-208ENST00000508604 EXOC3O60645 756 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 OAZ2O95190 189 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 ATXN1LP0C7T5 689 aaKnown RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 EDNRBP24530 442 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 LOXL3P58215 753 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 TCF15Q12870 199 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 ZNF268Q14587 947 aaPredicted RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 THEMIS2Q5TEJ8 643 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 KRT26Q7Z3Y9 468 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 IRF2BP2Q7Z5L9 587 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 CNTD1Q8N815 330 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 NRACQ8N912 160 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 FAM46DQ8NEK8 389 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 C1orf162Q8NEQ5 155 aaPredicted RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 COA7Q96BR5 231 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 RITA1Q96K30 269 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 MARK4Q96L34 752 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 WDCPQ9H6R7 721 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 MRPS18AQ9NVS2 196 aaKnown RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 MTMR4Q9NYA4 1195 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 FEZ2Q9UHY8 353 aaPredicted RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 MCM8Q9UJA3 840 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 AGAP1Q9UPQ3 857 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 NT5C1B-RDH14C9J2C7 533 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 ATP5F1P24539 256 aaPredicted RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 PRDX5P30044 214 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 PPIFP30405 207 aaKnown RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 PXNP49023 591 aaPredicted RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 GHRHRQ02643 423 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 E2F2Q14209 437 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 RBMS2Q15434 407 aaKnown RBP3.75□□□□□ -1.81
NUP54-208ENST00000508604 PPP1R32Q7Z5V6 425 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.75□□□□□ -1.81
NUP54-208ENST00000508604 TERB1Q8NA31 727 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 FAXDC2Q96IV6 333 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 SLC46A1Q96NT5 459 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 MACROD1Q9BQ69 325 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 SLC5A4Q9NY91 659 aa3.75□□□□□ -1.81
NUP54-208ENST00000508604 A1L4Q6 167 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 MT-CO1P00395 513 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 CYP2A6P11509 494 aaPredicted RBP3.74□□□□□ -1.81
NUP54-208ENST00000508604 TOB1P50616 345 aaPredicted RBP3.74□□□□□ -1.81
NUP54-208ENST00000508604 LONRF3Q496Y0 759 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 AMOTQ4VCS5 1084 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 ARHGAP40Q5TG30 622 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 GLG1Q92896 1179 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 MOGAT1Q96PD6 335 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 SNX18Q96RF0 628 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 PTDSS2Q9BVG9 487 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 DPCDQ9BVM2 203 aaPredicted RBP3.74□□□□□ -1.81
NUP54-208ENST00000508604 C1orf43Q9BWL3 253 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 TTYH3Q9C0H2 523 aa3.74□□□□□ -1.81
NUP54-208ENST00000508604 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.74□□□□□ -1.81
NUP54-208ENST00000508604 SCAF8Q9UPN6 1271 aaKnown RBP3.74□□□□□ -1.81
NUP54-208ENST00000508604 PHLDB1Q86UU1 1377 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 RNF8O76064 485 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 IARSP41252 1262 aaKnown RBP3.73□□□□□ -1.81
NUP54-208ENST00000508604 IQCB1Q15051 598 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 FCRL6Q6DN72 434 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 KIRREL2Q6UWL6 708 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 ZNF813Q6ZN06 617 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 Q6ZWC4 215 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 COQ8BQ96D53 544 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 R3HDM4Q96D70 268 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 LYZL4Q96KX0 146 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 FYTTD1Q96QD9 318 aaKnown RBP3.73□□□□□ -1.81
NUP54-208ENST00000508604 PCDHA3Q9Y5H8 950 aa3.73□□□□□ -1.81
NUP54-208ENST00000508604 TLDC2A0PJX2 215 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 PRSS29PA6NIE9 313 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms