RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 COL4A2P08572 1712 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 ANAPC1Q9H1A4 1944 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 HEPACAM2A8MVW5 462 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 GALR2O43603 387 aaPredicted RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 CLSTN1O94985 981 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 SMC2O95347 1197 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 F11P03951 625 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 TRIM49P0CI25 452 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 TRIM49CP0CI26 452 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 PSMC3P17980 439 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 RFX1P22670 979 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 BDNFP23560 247 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 RPL13P26373 211 aaKnown RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 CDC25CP30307 473 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 PSMC2P35998 433 aaKnown RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 RAP1GAPP47736 663 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 NUBP1P53384 320 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 PTPN5P54829 565 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 CDH8P55286 799 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 NLRP12P59046 1061 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 RPL10AP62906 217 aaKnown RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 PFKPQ01813 784 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 CYP27A1Q02318 531 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 MAPRE1Q15691 268 aaKnown RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 MLF2Q15773 248 aaPredicted RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 ARHGAP15Q53QZ3 475 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 ZNF667Q5HYK9 610 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 MDH1BQ5I0G3 518 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 ZNF658Q5TYW1 1059 aaPredicted RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 C4orf50Q6ZRC1 276 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 MFSD6LQ8IWD5 586 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 SCN4BQ8IWT1 228 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 FAM186BQ8IYM0 893 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 SMARCE1Q969G3 411 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 EEF2KMTQ96G04 330 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 PCED1BQ96HM7 432 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 SLC46A2Q9BY10 475 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 FOXQ1Q9C009 403 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 DPEP3Q9H4B8 488 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 SMYD3Q9H7B4 428 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 BRD9Q9H8M2 597 aa13.78□□□□□ -0.2
HDAC1-209ENST00000484305 MAGEC2Q9UBF1 373 aaPredicted RBP13.78□□□□□ -0.2
HDAC1-209ENST00000484305 SLC38A8A6NNN8 435 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 A8MXQ7 604 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 CACNA1HO95180 2353 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 CSH1P0DML2 217 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 CSH2P0DML3 217 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 PTPN1P18031 435 aaKnown RBP13.77□□□□□ -0.21
HDAC1-209ENST00000484305 CD72P21854 359 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 GDI1P31150 447 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 MAGEA11P43364 429 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 GCLMP48507 274 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 PPP3CAQ08209 521 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 SGSM1Q2NKQ1 1148 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 EDRF1Q3B7T1 1238 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 COBLL1Q53SF7 1204 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 SCARA5Q6ZMJ2 495 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 INTS8Q75QN2 995 aaKnown RBP13.77□□□□□ -0.21
HDAC1-209ENST00000484305 MYCBPAPQ8TBZ2 947 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 SHDQ96IW2 340 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 LRRC3BQ96PB8 259 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 GCNAQ96QF7 691 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 DDX23Q9BUQ8 820 aaKnown RBP13.77□□□□□ -0.21
HDAC1-209ENST00000484305 SDCBP2Q9H190 292 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 TASP1Q9H6P5 420 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 HEBP1Q9NRV9 189 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 HOOK1Q9UJC3 728 aaKnown RBP13.77□□□□□ -0.21
HDAC1-209ENST00000484305 SIT1Q9Y3P8 196 aa13.77□□□□□ -0.21
HDAC1-209ENST00000484305 KANSL1LA0AUZ9 987 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 H0Y858 1186 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 LRRN2O75325 713 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 NOL4O94818 638 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 PRAMEF12O95522 483 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 ASS1P00966 412 aaKnown RBP13.76□□□□□ -0.21
HDAC1-209ENST00000484305 HLA-DRAP01903 254 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 DCNP07585 359 aaKnown RBP13.76□□□□□ -0.21
HDAC1-209ENST00000484305 KRT13P13646 458 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 GRIK1P39086 918 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 PIK3CAP42336 1068 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 PMS1P54277 932 aaKnown RBP13.76□□□□□ -0.21
HDAC1-209ENST00000484305 MCCD1P59942 119 aaPredicted RBP13.76□□□□□ -0.21
HDAC1-209ENST00000484305 PRKCQQ04759 706 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 TXNDC8Q6A555 127 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 ANKRD40Q6AI12 368 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 ISM2Q6H9L7 571 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 SPOPLQ6IQ16 392 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 VSTM1Q6UX27 236 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 ELOA2Q8IYF1 753 aaPredicted RBP13.76□□□□□ -0.21
HDAC1-209ENST00000484305 CCDC105Q8IYK2 499 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 MAB21L3Q8N8X9 362 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 B3GALNT2Q8NCR0 500 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 PJA1Q8NG27 643 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 DEPDC1BQ8WUY9 529 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 DNASE1L2Q92874 299 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 IRF7Q92985 503 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 E2F7Q96AV8 911 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 TRMT2BQ96GJ1 504 aaKnown RBP13.76□□□□□ -0.21
HDAC1-209ENST00000484305 MYRFLQ96LU7 910 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 PHOX2BQ99453 314 aa13.76□□□□□ -0.21
HDAC1-209ENST00000484305 SMG9Q9H0W8 520 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms