RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 H2AFZP0C0S5 128 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 CCDC130P13994 396 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 ATP2A2P16615 1042 aaKnown RBP8.74□□□□□ -1.01
USP4-210ENST00000483212 MSNP26038 577 aaKnown RBP8.74□□□□□ -1.01
USP4-210ENST00000483212 PCSK1P29120 753 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 RPL34P49207 117 aaKnown RBP8.74□□□□□ -1.01
USP4-210ENST00000483212 PLCB3Q01970 1234 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 ELAVL2Q12926 359 aaKnown RBP8.74□□□□□ -1.01
USP4-210ENST00000483212 SHHQ15465 462 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 STILQ15468 1287 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 PTPN20Q4JDL3 420 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 MDH1BQ5I0G3 518 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 FAM171A1Q5VUB5 890 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 RSPO2Q6UXX9 243 aaPredicted RBP8.74□□□□□ -1.01
USP4-210ENST00000483212 H2AFVQ71UI9 128 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 KIAA1328Q86T90 577 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 METTL23Q86XA0 190 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 MCOLN2Q8IZK6 566 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 ANKRD52Q8NB46 1076 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 TMEM35BQ8NCS4 154 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 UBA3Q8TBC4 463 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 MYCBPAPQ8TBZ2 947 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 SLC2A14Q8TDB8 520 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 SLC35F5Q8WV83 523 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 CPA5Q8WXQ8 436 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 SECISBP2LQ93073 1101 aaKnown RBP8.74□□□□□ -1.01
USP4-210ENST00000483212 PCED1BQ96HM7 432 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 B3GALT6Q96L58 329 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 RAD9AQ99638 391 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 GDF15Q99988 308 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 HERC2P3Q9BVR0 1158 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 B3GNT5Q9BYG0 378 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 ZCWPW1Q9H0M4 648 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 LZTFL1Q9NQ48 299 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 CHST7Q9NS84 486 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 TJP2Q9UDY2 1190 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 GTF3C4Q9UKN8 822 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 INSL6Q9Y581 213 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 NR2E3Q9Y5X4 410 aa8.74□□□□□ -1.01
USP4-210ENST00000483212 NLRC5Q86WI3 1866 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 A0A0A6YYK5 440 aaPredicted RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 CARNS1A5YM72 827 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 OR6C75A6NL08 312 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 TULP2O00295 520 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 CLDN5O00501 218 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 MTA2O94776 668 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 SOD2P04179 222 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 CYP1A2P05177 515 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 OR4Q2P0C623 313 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 SETSIPP0DME0 302 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 ADORA2BP29275 332 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 GABRB2P47870 512 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 ALDH7A1P49419 539 aaKnown RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 CACNA2D1P54289 1103 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 GSCP56915 257 aaPredicted RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 PDE4CQ08493 712 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 KIF5AQ12840 1032 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 PDCLQ13371 301 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 FAM109BQ6ICB4 259 aaPredicted RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 PPP1R2P3Q6NXS1 205 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 LLGL2Q6P1M3 1020 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 MMS22LQ6ZRQ5 1243 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 FAM35AQ86V20 835 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 FIBCD1Q8N539 461 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 ZMIZ2Q8NF64 920 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 STK32AQ8WU08 396 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 PIK3R5Q8WYR1 880 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 MYLPFQ96A32 169 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 VCPIP1Q96JH7 1222 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 CPXM1Q96SM3 734 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 C11orf70Q9BRQ4 267 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 TTPALQ9BTX7 342 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 SLC4A5Q9BY07 1137 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 IRX2Q9BZI1 471 aaPredicted RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 TSGA10Q9BZW7 698 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 MTIF3Q9H2K0 278 aaKnown RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 CSNK1G1Q9HCP0 422 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 LUC7LQ9NQ29 371 aaKnown RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 AVENQ9NQS1 362 aaPredicted RBP8.73□□□□□ -1.01
USP4-210ENST00000483212 TMEM30AQ9NV96 361 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 MTRRQ9UBK8 725 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 COG5Q9UP83 839 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 CAPN6Q9Y6Q1 641 aa8.73□□□□□ -1.01
USP4-210ENST00000483212 COL4A4P53420 1690 aaPredicted RBP8.72□□□□□ -1.01
USP4-210ENST00000483212 LINC01553A4QN01 128 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 GRXCR1A8MXD5 290 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 ATMINO43313 823 aaPredicted RBP8.72□□□□□ -1.01
USP4-210ENST00000483212 BEST1O76090 585 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 VNN2O95498 520 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 ERBB2P04626 1255 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 MYBL1P10243 752 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 NPR3P17342 541 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 ABCB4P21439 1286 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 RRM1P23921 792 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 PPM1AP35813 382 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 NSFP46459 744 aaKnown RBP8.72□□□□□ -1.01
USP4-210ENST00000483212 PLA2G4AP47712 749 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 RABGGTBP53611 331 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 BCAT1P54687 386 aa8.72□□□□□ -1.01
USP4-210ENST00000483212 HADHBP55084 474 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms