RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 NELL1Q92832 810 aa19.9■□□□□ 0.78
COL7A1-209ENST00000474432 MYRFLQ96LU7 910 aa19.9■□□□□ 0.78
COL7A1-209ENST00000474432 MRPL45Q9BRJ2 306 aaKnown RBP19.9■□□□□ 0.78
COL7A1-209ENST00000474432 XYLT2Q9H1B5 865 aa19.9■□□□□ 0.78
COL7A1-209ENST00000474432 KCTD10Q9H3F6 313 aa19.9■□□□□ 0.78
COL7A1-209ENST00000474432 CGNQ9P2M7 1197 aaKnown RBP19.9■□□□□ 0.78
COL7A1-209ENST00000474432 FBXO4Q9UKT5 387 aa19.9■□□□□ 0.78
COL7A1-209ENST00000474432 NDRG2Q9UN36 371 aaKnown RBP19.9■□□□□ 0.78
COL7A1-209ENST00000474432 MRPS17Q9Y2R5 130 aaKnown RBP19.9■□□□□ 0.78
COL7A1-209ENST00000474432 CHRNB1P11230 501 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 TNNI1P19237 187 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 PCSK1P29120 753 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 CASP4P49662 377 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 PSMC1P62191 440 aaKnown RBP19.89■□□□□ 0.77
COL7A1-209ENST00000474432 MTAPQ13126 283 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 ZNF528Q3MIS6 628 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 TXNDC11Q6PKC3 985 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 CMTM8Q8IZV2 173 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 TMEM174Q8WUU8 243 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 TRMT2BQ96GJ1 504 aaKnown RBP19.89■□□□□ 0.77
COL7A1-209ENST00000474432 FUBP3Q96I24 572 aaKnown RBP eCLIP19.89■□□□□ 0.77
COL7A1-209ENST00000474432 SPATA32Q96LK8 384 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 SYT15Q9BQS2 421 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 CHRDQ9H2X0 955 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 GTSE1Q9NYZ3 720 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 CCL26Q9Y258 94 aa19.89■□□□□ 0.77
COL7A1-209ENST00000474432 SLC38A8A6NNN8 435 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 NCAM2O15394 837 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 LAMTOR5O43504 91 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 CSH1P0DML2 217 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 CSH2P0DML3 217 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 CCNE1P24864 410 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 MAGEA11P43364 429 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 NDUFA8P51970 172 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 RPL10AP62906 217 aaKnown RBP19.88■□□□□ 0.77
COL7A1-209ENST00000474432 CLDN10P78369 228 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 GAS6Q14393 721 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 TAF12Q16514 161 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 ARHGAP29Q52LW3 1261 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 TXNDC8Q6A555 127 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 MAMSTRQ6ZN01 415 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 YAF2Q8IY57 180 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 ADSSL1Q8N142 457 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 MAB21L3Q8N8X9 362 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 BPIFB1Q8TDL5 484 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 USP13Q92995 863 aaPredicted RBP19.88■□□□□ 0.77
COL7A1-209ENST00000474432 SEMA4AQ9H3S1 761 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 PRMT8Q9NR22 394 aaPredicted RBP19.88■□□□□ 0.77
COL7A1-209ENST00000474432 CDH9Q9ULB4 789 aa19.88■□□□□ 0.77
COL7A1-209ENST00000474432 TACC1O75410 805 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 STAU1O95793 577 aaKnown RBP19.87■□□□□ 0.77
COL7A1-209ENST00000474432 PDGFRBP09619 1106 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 PRR29P0C7W0 189 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 TDGF1P13385 188 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 MYL6P60660 151 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 KRT85P78386 507 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 CSTF1Q05048 431 aaKnown RBP19.87■□□□□ 0.77
COL7A1-209ENST00000474432 TNK2Q07912 1038 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 PSMD2Q13200 908 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 TSSK4Q6SA08 328 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 MON1AQ86VX9 555 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 SPATA2LQ8IUW3 424 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-209ENST00000474432 SLC9A9Q8IVB4 645 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 CELF5Q8N6W0 485 aaKnown RBP19.87■□□□□ 0.77
COL7A1-209ENST00000474432 TTC8Q8TAM2 541 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 PARD3BQ8TEW8 1205 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 MYLPFQ96A32 169 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 GCNAQ96QF7 691 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 FNBP1Q96RU3 617 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 LMAN1LQ9HAT1 526 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 USP25Q9UHP3 1055 aa19.87■□□□□ 0.77
COL7A1-209ENST00000474432 MAGED2Q9UNF1 606 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-209ENST00000474432 LRRIQ3A6PVS8 624 aaPredicted RBP19.86■□□□□ 0.77
COL7A1-209ENST00000474432 SOBPA7XYQ1 873 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 DPYSL4O14531 572 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 EXOC3O60645 756 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 FAM163BP0C2L3 166 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 CTHP32929 405 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 SUMF1Q8NBK3 374 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 ZBTB44Q8NCP5 570 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 CSGALNACT1Q8TDX6 532 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 CHFRQ96EP1 664 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 PCED1BQ96HM7 432 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 SLC22A12Q96S37 553 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 MMS19Q96T76 1030 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 FAM83CQ9BQN1 747 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 GOLPH3LQ9H4A5 285 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 C8orf33Q9H7E9 229 aaPredicted RBP19.86■□□□□ 0.77
COL7A1-209ENST00000474432 EXOC1Q9NV70 894 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 TMEM30AQ9NV96 361 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 ZMYM5Q9UJ78 669 aa19.86■□□□□ 0.77
COL7A1-209ENST00000474432 R3HCC1Q9Y3T6 440 aaKnown RBP19.86■□□□□ 0.77
COL7A1-209ENST00000474432 OTOL1A6NHN0 477 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-209ENST00000474432 SPECC1L-ADORA2AF8WAN1 911 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 VNN1O95497 513 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 LMNAP02545 664 aaKnown RBP19.85■□□□□ 0.77
COL7A1-209ENST00000474432 C4BPAP04003 597 aaKnown RBP19.85■□□□□ 0.77
COL7A1-209ENST00000474432 DDX6P26196 483 aaKnown RBP eCLIP19.85■□□□□ 0.77
COL7A1-209ENST00000474432 DLG4P78352 724 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 WDR72Q3MJ13 1102 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms