RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 LIMD1Q9UGP4 676 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 C5orf42Q9H799 3197 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 CILPO75339 1184 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 MOSPD3O75425 235 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 ASGR2P07307 311 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 PRKCSHP14314 528 aaPredicted RBP12.42□□□□□ -0.42
CUX1-207ENST00000465461 CEBPBP17676 345 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 SLC9A1P19634 815 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 GRIK1P39086 918 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 SMARCB1Q12824 385 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 PLD1Q13393 1074 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 CUL2Q13617 745 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 PRSS36Q5K4E3 855 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 IQCEQ6IPM2 695 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 GJB7Q6PEY0 223 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 PAQR9Q6ZVX9 377 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 RTL10Q7L3V2 364 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 TMC8Q8IU68 726 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 RNF135Q8IUD6 432 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 GPIHBP1Q8IV16 184 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 TDRD5Q8NAT2 981 aaKnown RBP12.42□□□□□ -0.42
CUX1-207ENST00000465461 RSAD2Q8WXG1 361 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 MCRS1Q96EZ8 462 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 MED10Q9BTT4 135 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 LRRC3Q9BY71 257 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 INTS2Q9H0H0 1204 aaKnown RBP12.42□□□□□ -0.42
CUX1-207ENST00000465461 SMOC2Q9H3U7 446 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 CYP3A43Q9HB55 503 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 CISHQ9NSE2 258 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 TMEM30AQ9NV96 361 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 TAB2Q9NYJ8 693 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 MUTYHQ9UIF7 546 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 MAGED2Q9UNF1 606 aaPredicted RBP12.42□□□□□ -0.42
CUX1-207ENST00000465461 MRPS23Q9Y3D9 190 aaKnown RBP12.42□□□□□ -0.42
CUX1-207ENST00000465461 NR2E1Q9Y466 385 aa12.42□□□□□ -0.42
CUX1-207ENST00000465461 A0A1W2PRU2 124 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 BEST1O76090 585 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 CALCAP01258 141 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 POU2F2P09086 479 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 ADORA2BP29275 332 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 INCA1Q0VD86 236 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 NCAPHQ15003 741 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 TEAD2Q15562 447 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 NFKBIBQ15653 356 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 CFAP221Q4G0U5 840 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 VWA3BQ502W6 1294 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 TCP11X2Q5H9J9 407 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 CT47A1Q5JQC4 288 aaPredicted RBP12.41□□□□□ -0.42
CUX1-207ENST00000465461 MIIPQ5JXC2 388 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 STXBP5Q5T5C0 1151 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 PHLDB3Q6NSJ2 640 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 C4orf50Q6ZRC1 276 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 PDZD4Q76G19 769 aaPredicted RBP12.41□□□□□ -0.42
CUX1-207ENST00000465461 OTOP3Q7RTS5 596 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 UNC93AQ86WB7 457 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 FAM114A1Q8IWE2 563 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 PPM1KQ8N3J5 372 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 AOPEPQ8N6M6 819 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 SLC2A14Q8TDB8 520 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 FGF13Q92913 245 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 PSMG2Q969U7 264 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 NT5C1BQ96P26 610 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 KCNK16Q96T55 309 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 TUBGCP2Q9BSJ2 902 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 FUCA2Q9BTY2 467 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 ASAH2Q9NR71 780 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 GCNT4Q9P109 453 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 HSFX1Q9UBD0 423 aa12.41□□□□□ -0.42
CUX1-207ENST00000465461 SLC38A8A6NNN8 435 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 F8VP50 259 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 RNF225M0QZC1 329 aaPredicted RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 TNFRSF10AO00220 468 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 PES1O00541 588 aaKnown RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 PMM2O15305 246 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 P4HA2O15460 535 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 LAMP2P13473 410 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 HMGA1P17096 107 aaKnown RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 RAD23BP54727 409 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 CYP4F8P98187 520 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 MYL5Q02045 173 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 CETN1Q12798 172 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 IFRD2Q12894 506 aaPredicted RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 VEPH1Q14D04 833 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 MAPRE1Q15691 268 aaKnown RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 TAF12Q16514 161 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 MAN2A1Q16706 1144 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 CYP4A22Q5TCH4 519 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 CDKAL1Q5VV42 579 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 GAREM2Q75VX8 874 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 FAM35AQ86V20 835 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 NPAS3Q8IXF0 933 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 FUKQ8N0W3 1084 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 CRYBG2Q8N1P7 616 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 SLC4A11Q8NBS3 891 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 SHKBP1Q8TBC3 707 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 ACSF2Q96CM8 615 aaPredicted RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 FUBP3Q96I24 572 aaKnown RBP eCLIP12.4□□□□□ -0.42
CUX1-207ENST00000465461 TNIP3Q96KP6 325 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 HEXIM2Q96MH2 286 aaKnown RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 ZSWIM3Q96MP5 696 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms