RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CISHQ9NSE2 258 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 FANCLQ9NW38 375 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 ASB3Q9Y575 518 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 ATP8B3O60423 1300 aa24.33■■□□□ 1.48
CCDC28B-203ENST00000461819 DOCK8Q8NF50 2099 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 CILPO75339 1184 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 BDNFP23560 247 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 GBP2P32456 591 aaPredicted RBP24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 YWHAEP62258 255 aaKnown RBP24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 RPL10AP62906 217 aaKnown RBP24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 NFKBIBQ15653 356 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 TAF12Q16514 161 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 CYP4A22Q5TCH4 519 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 CDKAL1Q5VV42 579 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 GBP6Q6ZN66 633 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 PDZD4Q76G19 769 aaPredicted RBP24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 SCN4BQ8IWT1 228 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 PPM1KQ8N3J5 372 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 GIPC2Q8TF65 315 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 CRACR2AQ9BSW2 395 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 MED10Q9BTT4 135 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 FAM124BQ9H5Z6 455 aaPredicted RBP24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 USTQ9Y2C2 406 aa24.32■■□□□ 1.48
CCDC28B-203ENST00000461819 C2CD4DB7Z1M9 353 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 LOC730098B7Z3J9 87 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 TPM2P07951 284 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 MAGEA11P43364 429 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 GPR15P49685 360 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 ZSCAN23Q3MJ62 389 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 VWA3BQ502W6 1294 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 ZNF394Q53GI3 561 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 VSTM1Q6UX27 236 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 GJD3Q8N144 294 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 LMO3Q8TAP4 145 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 GPR152Q8TDT2 470 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 PSMG2Q969U7 264 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 TWNKQ96RR1 684 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 ELOVL4Q9GZR5 314 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 NDST4Q9H3R1 872 aa24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 MRPS23Q9Y3D9 190 aaKnown RBP24.31■■□□□ 1.48
CCDC28B-203ENST00000461819 GREB1Q4ZG55 1949 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 C19orf67A6NJJ6 358 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 MYL4P12829 197 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 GRIK1P39086 918 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 DDR2Q16832 855 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 HS6ST3Q8IZP7 471 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 CRYBG2Q8N1P7 616 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 LEMD2Q8NC56 503 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 ANKRD20A12PQ8NF67 263 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 BPIFA3Q9BQP9 254 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 FUCA2Q9BTY2 467 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 COL25A1Q9BXS0 654 aaPredicted RBP24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 B3GNT5Q9BYG0 378 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 ZNF518BQ9C0D4 1074 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 FAM49BQ9NUQ9 324 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 TAB2Q9NYJ8 693 aa24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.3■■□□□ 1.48
CCDC28B-203ENST00000461819 GTPBP10A4D1E9 387 aaKnown RBP24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 CLDN5O00501 218 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 ZNF197O14709 1029 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 ANXA13P27216 316 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 EXOC3L4Q17RC7 722 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 SLC5A9Q2M3M2 681 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 MIIPQ5JXC2 388 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 SDHAF4Q5VUM1 108 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 DNAJB7Q7Z6W7 309 aaPredicted RBP24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 FAM35AQ86V20 835 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 ARHGEF19Q8IW93 802 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 WHAMMQ8TF30 809 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 ING5Q8WYH8 240 aa24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 AVENQ9NQS1 362 aaPredicted RBP24.29■■□□□ 1.48
CCDC28B-203ENST00000461819 OBSL1O75147 1896 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 TRIM66O15016 1216 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 CCDC130P13994 396 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 ZNF165P49910 485 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 TRIM65Q6PJ69 517 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 RRAGAQ7L523 313 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 PLCD3Q8N3E9 789 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 C12orf29Q8N999 325 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 STKLD1Q8NE28 680 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 ITFG1Q8TB96 612 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 SLC2A14Q8TDB8 520 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 MYADMQ96S97 322 aa24.28■■□□□ 1.48
CCDC28B-203ENST00000461819 SMTNL1A8MU46 457 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 CSH1P0DML2 217 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 CSH2P0DML3 217 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 CDK11BP21127 795 aaKnown RBP24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 EPHA5P54756 1037 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 GCNT1Q02742 428 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 NCAPHQ15003 741 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 KRT31Q15323 416 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 TMC8Q8IU68 726 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 FUKQ8N0W3 1084 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 SMARCD1Q96GM5 515 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 TMEM176AQ96HP8 235 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 HEXIM2Q96MH2 286 aaKnown RBP24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 VPS16Q9H269 839 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 ZNF334Q9HCZ1 680 aaPredicted RBP24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 CD320Q9NPF0 282 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 KRT82Q9NSB4 513 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms