RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 OR6B3Q8NGW1 331 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 MRPL45Q9BRJ2 306 aaKnown RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 OSBPL6Q9BZF3 934 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 DLGAP2Q9P1A6 1054 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 MAGEC2Q9UBF1 373 aaPredicted RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 UXTQ9UBK9 157 aaPredicted RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 ZMYM5Q9UJ78 669 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 MAGED2Q9UNF1 606 aaPredicted RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 MYH10P35580 1976 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 HELZP42694 1942 aaKnown RBP22.69■■□□□ 1.22
HMGB3-205ENST00000455596 CLSTN1O94985 981 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 F11P03951 625 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 C4BPAP04003 597 aaKnown RBP22.69■■□□□ 1.22
HMGB3-205ENST00000455596 WEE1P30291 646 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 GNL1P36915 607 aaPredicted RBP22.69■■□□□ 1.22
HMGB3-205ENST00000455596 NLRP12P59046 1061 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 ANGPT1Q15389 498 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 NFIL3Q16649 462 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 FMR1NBQ8N0W7 255 aaPredicted RBP22.69■■□□□ 1.22
HMGB3-205ENST00000455596 GUF1Q8N442 669 aaKnown RBP22.69■■□□□ 1.22
HMGB3-205ENST00000455596 STKLD1Q8NE28 680 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 TMC2Q8TDI7 906 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 MYLPFQ96A32 169 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 RSPRY1Q96DX4 576 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 NELL2Q99435 816 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 XYLT2Q9H1B5 865 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 LTB4R2Q9NPC1 389 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 CRTAC1Q9NQ79 661 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 OBP2AQ9NY56 170 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 NXF1Q9UBU9 619 aaKnown RBP22.69■■□□□ 1.22
HMGB3-205ENST00000455596 MAPK8IP1Q9UQF2 711 aa22.69■■□□□ 1.22
HMGB3-205ENST00000455596 FAM170BA6NMN3 283 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 CD72P21854 359 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 MAGEA11P43364 429 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 DLG4P78352 724 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 ZNF852Q6ZMS4 543 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 TMEM150AQ86TG1 271 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 GPIHBP1Q8IV16 184 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 SCN4BQ8IWT1 228 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 VRTNQ9H8Y1 702 aa22.68■■□□□ 1.22
HMGB3-205ENST00000455596 MRPS17Q9Y2R5 130 aaKnown RBP22.68■■□□□ 1.22
HMGB3-205ENST00000455596 SLC38A8A6NNN8 435 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 MAPK13O15264 365 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 CHADO15335 359 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 LRRN2O75325 713 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 NOL4O94818 638 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 NR2F2P24468 414 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 DDX6P26196 483 aaKnown RBP eCLIP22.67■■□□□ 1.22
HMGB3-205ENST00000455596 CYP27A1Q02318 531 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 FCHO2Q0JRZ9 810 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 NCOA4Q13772 614 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 ZNF699Q32M78 642 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 ZNF667Q5HYK9 610 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 VSTM1Q6UX27 236 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 MYCBPAPQ8TBZ2 947 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 TRMT2BQ96GJ1 504 aaKnown RBP22.67■■□□□ 1.22
HMGB3-205ENST00000455596 SLC46A2Q9BY10 475 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 BCO2Q9BYV7 579 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 MTF2Q9Y483 593 aaPredicted RBP22.67■■□□□ 1.22
HMGB3-205ENST00000455596 NME7Q9Y5B8 376 aa22.67■■□□□ 1.22
HMGB3-205ENST00000455596 MAN2B1O00754 1011 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 IKBKBO14920 756 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 NCAM2O15394 837 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 GLULP15104 373 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 BDNFP23560 247 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 RPL13P26373 211 aaKnown RBP22.66■■□□□ 1.22
HMGB3-205ENST00000455596 PNOCQ13519 176 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 MDH1BQ5I0G3 518 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 CMTM8Q8IZV2 173 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 MAB21L3Q8N8X9 362 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 CSGALNACT1Q8TDX6 532 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 MRPS31Q92665 395 aaKnown RBP22.66■■□□□ 1.22
HMGB3-205ENST00000455596 PCED1BQ96HM7 432 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 MYRFLQ96LU7 910 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 RMND1Q9NWS8 449 aa22.66■■□□□ 1.22
HMGB3-205ENST00000455596 FANCMQ8IYD8 2048 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 SOBPA7XYQ1 873 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 A8MXQ7 604 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 ARNTLO00327 626 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 VNN1O95497 513 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 PRAMEF12O95522 483 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 TARSP26639 723 aaKnown RBP22.65■■□□□ 1.22
HMGB3-205ENST00000455596 ANXA13P27216 316 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 AVPR1AP37288 418 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 GRIK1P39086 918 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 MAGEA9P43362 315 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 VAMP7P51809 220 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 ZACNQ401N2 412 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 ARHGAP29Q52LW3 1261 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 CELF5Q8N6W0 485 aaKnown RBP22.65■■□□□ 1.22
HMGB3-205ENST00000455596 BPIFB1Q8TDL5 484 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 CEP295NLQ96MC4 621 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 PIAS3Q9Y6X2 628 aa22.65■■□□□ 1.22
HMGB3-205ENST00000455596 TRIM66O15016 1216 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 PTPN1P18031 435 aaKnown RBP22.64■■□□□ 1.21
HMGB3-205ENST00000455596 NBL1P41271 181 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 FAM160A1Q05DH4 1040 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 ADAM9Q13443 819 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 SGSM1Q2NKQ1 1148 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 TXNDC8Q6A555 127 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms