RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 PRPF31Q8WWY3 499 aaKnown RBP20.11■□□□□ 0.81
HMGA1-205ENST00000447654 CYTH2Q99418 400 aa20.11■□□□□ 0.81
HMGA1-205ENST00000447654 TSSK1BQ9BXA7 367 aa20.11■□□□□ 0.81
HMGA1-205ENST00000447654 PI4KBQ9UBF8 816 aa20.11■□□□□ 0.81
HMGA1-205ENST00000447654 TAGLN3Q9UI15 199 aa20.11■□□□□ 0.81
HMGA1-205ENST00000447654 AJAP1Q9UKB5 411 aaPredicted RBP20.11■□□□□ 0.81
HMGA1-205ENST00000447654 RAB26Q9ULW5 256 aa20.11■□□□□ 0.81
HMGA1-205ENST00000447654 NEU2Q9Y3R4 380 aa20.11■□□□□ 0.81
HMGA1-205ENST00000447654 POTEMA6NI47 508 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 ZBTB5O15062 677 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 DLDP09622 509 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 COMTP21964 271 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 POLD1P28340 1107 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 MAGEA4P43358 317 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 SNAP25P60880 206 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 ZNF423Q2M1K9 1284 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 HYIQ5T013 277 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 CHSY1Q86X52 802 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 RBM15BQ8NDT2 890 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 CASP10Q92851 521 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 NACA2Q9H009 215 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 hCG_1984214I3L0E3 225 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 CALUO43852 315 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 TAL1P17542 331 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 MARCKSL1P49006 195 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 FKBP1AP62942 108 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 GPC5P78333 572 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 SEPT7Q16181 437 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 PKN2Q16513 984 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 CLEC16AQ2KHT3 1053 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 NEPROQ6NW34 567 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 TATDN1Q6P1N9 297 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 ZCCHC9Q8N567 271 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 ZNF713Q8N859 430 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 CCDC89Q8N998 374 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 GDPD5Q8WTR4 605 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 VTI1AQ96AJ9 217 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 CAMKK2Q96RR4 588 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 SERPINA10Q9UK55 444 aa20.1■□□□□ 0.81
HMGA1-205ENST00000447654 TDRKHQ9Y2W6 561 aaKnown RBP20.1■□□□□ 0.81
HMGA1-205ENST00000447654 KDM3AQ9Y4C1 1321 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 GSTTP1A0A1W2PQM5 241 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 TCRBV7S2A1N4TA0A589 114 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L15C9J2P7 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L13C9JLJ4 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L11C9JVI0 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L18D6R9N7 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L22D6RA61 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L17D6RBQ6 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L19D6RCP7 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L20D6RJB6 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 H3BRJ5 948 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP1O94782 785 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 EIF2S1P05198 315 aaKnown RBP20.09■□□□□ 0.81
HMGA1-205ENST00000447654 CDH2P19022 906 aaPredicted RBP20.09■□□□□ 0.81
HMGA1-205ENST00000447654 RFX1P22670 979 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 NUP107P57740 925 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L24Q0WX57 530 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 ITGA7Q13683 1181 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 EFHC1Q5JVL4 640 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 GPATCH4Q5T3I0 446 aaKnown RBP20.09■□□□□ 0.81
HMGA1-205ENST00000447654 USP17L6PQ6QN14 398 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 NANOGNBQ7Z5D8 188 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 ARL10Q8N8L6 244 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 CCDC17Q96LX7 622 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 OSBPL6Q9BZF3 934 aa20.09■□□□□ 0.81
HMGA1-205ENST00000447654 IPO5O00410 1097 aaKnown RBP20.08■□□□□ 0.81
HMGA1-205ENST00000447654 PDXKO00764 312 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 PDGFRBP09619 1106 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 PPARGP37231 505 aaPredicted RBP20.08■□□□□ 0.81
HMGA1-205ENST00000447654 FDFT1P37268 417 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 ADCY8P40145 1251 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 SNAPC2Q13487 334 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 TMC7Q7Z402 723 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 P2RX7Q99572 595 aaKnown RBP20.08■□□□□ 0.81
HMGA1-205ENST00000447654 FBXO6Q9NRD1 293 aaPredicted RBP20.08■□□□□ 0.81
HMGA1-205ENST00000447654 KCNK4Q9NYG8 393 aa20.08■□□□□ 0.81
HMGA1-205ENST00000447654 PSMC3IPQ9P2W1 217 aaPredicted RBP20.08■□□□□ 0.81
HMGA1-205ENST00000447654 TTLL13PA6NNM8 815 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 SPDYE16A6NNV3 312 aaPredicted RBP20.08■□□□□ 0.8
HMGA1-205ENST00000447654 POTECB2RU33 542 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 PCSK6P29122 969 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 PIK3CAP42336 1068 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 CENPCQ03188 943 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 PDAP1Q13442 181 aaKnown RBP20.08■□□□□ 0.8
HMGA1-205ENST00000447654 ECM1Q16610 540 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 QRICH1Q2TAL8 776 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 KCNK18Q7Z418 384 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 GIPC3Q8TF64 312 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 HAS1Q92839 578 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 SLC35C1Q96A29 364 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 SGF29Q96ES7 293 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 POP1Q99575 1024 aaKnown RBP20.08■□□□□ 0.8
HMGA1-205ENST00000447654 ARPC5LQ9BPX5 153 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 CEPT1Q9Y6K0 416 aa20.08■□□□□ 0.8
HMGA1-205ENST00000447654 CCNT2O60583 730 aaKnown RBP20.07■□□□□ 0.8
HMGA1-205ENST00000447654 DKC1O60832 514 aaKnown RBP eCLIP20.07■□□□□ 0.8
HMGA1-205ENST00000447654 CDK9P50750 372 aaKnown RBP20.07■□□□□ 0.8
HMGA1-205ENST00000447654 RWDD4Q6NW29 188 aaKnown RBP20.07■□□□□ 0.8
HMGA1-205ENST00000447654 TMEM126BQ8IUX1 230 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms