RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 METRNQ9UJH8 293 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 CILPO75339 1184 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 RHOP08100 348 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 C7P10643 843 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 CYP2F1P24903 491 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 MAPRE1Q15691 268 aaKnown RBP13.29□□□□□ -0.28
SKA1-203ENST00000417656 CFAP221Q4G0U5 840 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 PABPC1LQ4VXU2 614 aaKnown RBP13.29□□□□□ -0.28
SKA1-203ENST00000417656 VWA3BQ502W6 1294 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 SDHAF4Q5VUM1 108 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 UNC93AQ86WB7 457 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 PPM1KQ8N3J5 372 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 FAM200AQ8TCP9 573 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 GPR152Q8TDT2 470 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 WHAMMQ8TF30 809 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 KAT5Q92993 513 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 FUBP3Q96I24 572 aaKnown RBP eCLIP13.29□□□□□ -0.28
SKA1-203ENST00000417656 FAXDC2Q96IV6 333 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 RPGRIP1Q96KN7 1286 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 TNIP3Q96KP6 325 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 CORO1BQ9BR76 489 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 CRACR2AQ9BSW2 395 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 B3GNT5Q9BYG0 378 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 ZNF518BQ9C0D4 1074 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 ELOVL4Q9GZR5 314 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 CISHQ9NSE2 258 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 FAM49BQ9NUQ9 324 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 PATJQ8NI35 1801 aa13.29□□□□□ -0.28
SKA1-203ENST00000417656 DOCK8Q8NF50 2099 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 OBSL1O75147 1896 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 C2CD4DB7Z1M9 353 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 CLDN5O00501 218 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 PES1O00541 588 aaKnown RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 CCDC130P13994 396 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 BDNFP23560 247 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 FSHRP23945 695 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 TBXAS1P24557 533 aaPredicted RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 MAGEA11P43364 429 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 TUFMP49411 452 aaKnown RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 CACNA2D1P54289 1103 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 EPHB3P54753 998 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 APBA1Q02410 837 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 VEPH1Q14D04 833 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 KRT31Q15323 416 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 SLC5A9Q2M3M2 681 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 ZNF394Q53GI3 561 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 IQCEQ6IPM2 695 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 TRIM65Q6PJ69 517 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 FAM35AQ86V20 835 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 SCN4BQ8IWT1 228 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 DHX40Q8IX18 779 aaKnown RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 HS6ST3Q8IZP7 471 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 UBR7Q8N806 425 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 TDRD5Q8NAT2 981 aaKnown RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 EHBP1Q8NDI1 1231 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 GIPC2Q8TF65 315 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 ING5Q8WYH8 240 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 ZNF512Q96ME7 567 aaPredicted RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 BPIFA3Q9BQP9 254 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 NT5C1AQ9BXI3 368 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 HSD3B7Q9H2F3 369 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 NDST4Q9H3R1 872 aa13.28□□□□□ -0.28
SKA1-203ENST00000417656 ZNF334Q9HCZ1 680 aaPredicted RBP13.28□□□□□ -0.28
SKA1-203ENST00000417656 GREB1Q4ZG55 1949 aa13.27□□□□□ -0.28
SKA1-203ENST00000417656 GTPBP10A4D1E9 387 aaKnown RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 LOC730098B7Z3J9 87 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 NRG2O14511 850 aaPredicted RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 MYL4P12829 197 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 ZNF18P17022 549 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 CEBPBP17676 345 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 PTPN2P17706 415 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 SLC9A1P19634 815 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 SSTR3P32745 418 aaPredicted RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 ZNF165P49910 485 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 YWHAEP62258 255 aaKnown RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 RPL10AP62906 217 aaKnown RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 DDR2Q16832 855 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 EXOC3L4Q17RC7 722 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 PRSS36Q5K4E3 855 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 GBP6Q6ZN66 633 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 PDZD4Q76G19 769 aaPredicted RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 RRAGAQ7L523 313 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 TMC8Q8IU68 726 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 FUKQ8N0W3 1084 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 C12orf29Q8N999 325 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 ITFG1Q8TB96 612 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 PSMG2Q969U7 264 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 MYADMQ96S97 322 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 MED10Q9BTT4 135 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 COL25A1Q9BXS0 654 aaPredicted RBP13.27□□□□□ -0.29
SKA1-203ENST00000417656 CD320Q9NPF0 282 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 ASAH2Q9NR71 780 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 KRT82Q9NSB4 513 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 TMEM30AQ9NV96 361 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 NR2E1Q9Y466 385 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 ATP8B3O60423 1300 aa13.27□□□□□ -0.29
SKA1-203ENST00000417656 F8VP50 259 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 ATP1A3P13637 1013 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 GJA1P17302 382 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 ADORA2BP29275 332 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms