RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DGKKQ5KSL6 1271 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 FSTL4Q6MZW2 842 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 MAMSTRQ6ZN01 415 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 SPATA2LQ8IUW3 424 aaPredicted RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 NELFCDQ8IXH7 590 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 LRRC52Q8N7C0 313 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 MRPS31Q92665 395 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 SECISBP2LQ93073 1101 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 MSANTD3Q96H12 275 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 FAM83CQ9BQN1 747 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 TDP1Q9NUW8 608 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 INTS13Q9NVM9 706 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 GDAP2Q9NXN4 497 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 HSPBP1Q9NZL4 362 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 C2orf78A6NCI8 922 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 EGFP01133 1207 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 WEE1P30291 646 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 PLCB2Q00722 1185 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 ALCAMQ13740 583 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 CCDC6Q16204 474 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 NFE2Q16621 373 aaPredicted RBP12.41□□□□□ -0.42
USP4-204ENST00000416417 SHC4Q6S5L8 630 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 MON1AQ86VX9 555 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 TMEM86AQ8N2M4 240 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 ARL14EPQ8N8R7 260 aaPredicted RBP12.41□□□□□ -0.42
USP4-204ENST00000416417 LEO1Q8WVC0 666 aaPredicted RBP12.41□□□□□ -0.42
USP4-204ENST00000416417 KBTBD7Q8WVZ9 684 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 MYLPFQ96A32 169 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 ELMO3Q96BJ8 720 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 INTS4Q96HW7 963 aaKnown RBP12.41□□□□□ -0.42
USP4-204ENST00000416417 HPDLQ96IR7 371 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 ANKRD36BP1Q96IX9 119 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 SYT15Q9BQS2 421 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 IER2Q9BTL4 223 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 BACH2Q9BYV9 841 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 TRIM9Q9C026 710 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 BLZF1Q9H2G9 400 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 ZSCAN16Q9H4T2 348 aaPredicted RBP12.41□□□□□ -0.42
USP4-204ENST00000416417 TMEM206Q9H813 350 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 CRTAC1Q9NQ79 661 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 NME7Q9Y5B8 376 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 WNT6Q9Y6F9 365 aa12.41□□□□□ -0.42
USP4-204ENST00000416417 ANTXRLA6NF34 631 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 ZNF233A6NK53 670 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 GABRDO14764 452 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 TGFB1I1O43294 461 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 NOL4O94818 638 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 CST3P01034 146 aaPredicted RBP12.4□□□□□ -0.42
USP4-204ENST00000416417 TNNC2P02585 160 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 DLATP10515 647 aaKnown RBP12.4□□□□□ -0.42
USP4-204ENST00000416417 BDNFP23560 247 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 CYP2J2P51589 502 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 RPL10AP62906 217 aaKnown RBP12.4□□□□□ -0.42
USP4-204ENST00000416417 LAIR1Q6GTX8 287 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.4□□□□□ -0.42
USP4-204ENST00000416417 LONP2Q86WA8 852 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 GRAMD1CQ8IYS0 662 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 TOP6BLQ8N6T0 577 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 MMS19Q96T76 1030 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 MRPL45Q9BRJ2 306 aaKnown RBP12.4□□□□□ -0.42
USP4-204ENST00000416417 KBTBD4Q9NVX7 518 aa12.4□□□□□ -0.42
USP4-204ENST00000416417 CDV3Q9UKY7 258 aaKnown RBP12.4□□□□□ -0.42
USP4-204ENST00000416417 SCAMP3O14828 347 aaKnown RBP12.39□□□□□ -0.43
USP4-204ENST00000416417 GDF9O60383 454 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 LHX1P48742 406 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 GALK1P51570 392 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 USP46P62068 366 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 CYP27A1Q02318 531 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 MTF1Q14872 753 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 DUOXA2Q1HG44 320 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 CC2D1AQ6P1N0 951 aaPredicted RBP12.39□□□□□ -0.43
USP4-204ENST00000416417 FAM171BQ6P995 826 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 CEP68Q76N32 757 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 EPM2AIP1Q7L775 607 aaPredicted RBP12.39□□□□□ -0.43
USP4-204ENST00000416417 FAM160A2Q8N612 972 aaPredicted RBP12.39□□□□□ -0.43
USP4-204ENST00000416417 SPRYD3Q8NCJ5 442 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 CCDC127Q96BQ5 260 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 TNMDQ9H2S6 317 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 LINC00597Q9H2U6 94 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 ABCB6Q9NP58 842 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 AGPAT3Q9NRZ7 376 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 R3HCC1Q9Y3T6 440 aaKnown RBP12.39□□□□□ -0.43
USP4-204ENST00000416417 MORC2Q9Y6X9 1032 aaPredicted RBP12.39□□□□□ -0.43
USP4-204ENST00000416417 CACNA1AO00555 2505 aa12.39□□□□□ -0.43
USP4-204ENST00000416417 OBSL1O75147 1896 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.38□□□□□ -0.43
USP4-204ENST00000416417 AXIN1O15169 862 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 RNF40O75150 1001 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 CKMP06732 381 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 DDX6P26196 483 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP4-204ENST00000416417 PCSK1P29120 753 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 GJA4P35212 333 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 CACNA2D1P54289 1103 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 LMNB2Q03252 620 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 GRSF1Q12849 480 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP4-204ENST00000416417 MYO1EQ12965 1108 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 ZNF77Q15935 545 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 CFAP221Q4G0U5 840 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 TMEM196Q5HYL7 178 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 MDH1BQ5I0G3 518 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms