RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 EIF3EP60228 445 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 CYP1B1Q16678 543 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 ZC3H12AQ5D1E8 599 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 MPZL3Q6UWV2 235 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 TRPM8Q7Z2W7 1104 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 EXD1Q8NHP7 514 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 MAIP1Q8WWC4 291 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 ZNF317Q96PQ6 595 aaPredicted RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 TMEM237Q96Q45 408 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 RBPJLQ9UBG7 517 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 E5RJQ4 531 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 ZC3H11AO75152 810 aaKnown RBP eCLIP14.07□□□□□ -0.166e-8■■■■■ 27.4
VPS54-203ENST00000409558 LRCH4O75427 683 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 CALB1P05937 261 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 RPA3P35244 121 aaPredicted RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 IREB2P48200 963 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 PPP2R5DQ14738 602 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 TFDP3Q5H9I0 405 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 IER5Q5VY09 327 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 VSIG1Q86XK7 387 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 EIF1ADQ8N9N8 165 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 CDCA5Q96FF9 252 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 HPDLQ96IR7 371 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 RBM41Q96IZ5 413 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 RMDN2Q96LZ7 410 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 SETD4Q9NVD3 440 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 C2orf71A6NGG8 1288 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 FAM155BO75949 473 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 NDST1P52848 882 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 RFX8Q6ZV50 586 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 WDR49Q8IV35 697 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 DNERQ8NFT8 737 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 KCNV2Q8TDN2 545 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 FAM149B1Q96BN6 582 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 TRIM6Q9C030 488 aaPredicted RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 ELOVL4Q9GZR5 314 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 GOLGA2P5Q9HBQ8 144 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 TPX2Q9ULW0 747 aaKnown RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 COL2A1P02458 1487 aaPredicted RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 CCDC195A0A1B0GUA6 201 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 LCP1P13796 627 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 PTP4A2Q12974 167 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 FNBP1LQ5T0N5 605 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 CYB5D1Q6P9G0 228 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 DPP9Q86TI2 863 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 RCOR2Q8IZ40 523 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 KLHL29Q96CT2 875 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 ZNF112Q9UJU3 913 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 EVPLQ92817 2033 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 CCDC78A2IDD5 438 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 PSTPIP1O43586 416 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 MICAL2O94851 1124 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 ASPAP45381 313 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 HIF1AQ16665 826 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 HADHQ16836 314 aaKnown RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 CELF3Q5SZQ8 465 aaKnown RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 ZNF677Q86XU0 584 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 TTC17Q96AE7 1141 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 PGLYRP2Q96PD5 576 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 SMC6Q96SB8 1091 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 ECT2Q9H8V3 914 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 SEPT10Q9P0V9 454 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 ATP2A1O14983 1001 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 FOXN2P32314 431 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 GBP2P32456 591 aaPredicted RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 OAZ1P54368 228 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 C1QBPQ07021 282 aaKnown RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 KLF1Q13351 362 aaPredicted RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 MAP1SQ66K74 1059 aaPredicted RBP14.06□□□□□ -0.16
VPS54-203ENST00000409558 CASC4Q6P4E1 433 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 KATNAL2Q8IYT4 538 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 FBXO36Q8NEA4 188 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 SIX4Q9UIU6 781 aa14.06□□□□□ -0.16
VPS54-203ENST00000409558 RFC5P40937 340 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 EFNA5P52803 228 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 PHF13Q86YI8 300 aaPredicted RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 RIOX2Q8IUF8 465 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 SLC13A1Q9BZW2 595 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 XPO7Q9UIA9 1087 aaKnown RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 IKBKGQ9Y6K9 419 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 hCG_1818297A0A087WSY0 165 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 CDH16O75309 829 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 APRTP07741 180 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 ARF4P18085 180 aaPredicted RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 MYO1EQ12965 1108 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 ARFGAP1Q8N6T3 406 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 CLEC4CQ8WTT0 213 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 RXFP2Q8WXD0 754 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 C18orf25Q96B23 403 aaPredicted RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 RAB6BQ9NRW1 208 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 SNTG2Q9NY99 539 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 CPSF3Q9UKF6 684 aaKnown RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 A0A0G2JND7 137 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 H0Y3Z8 333 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 KITP10721 976 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 TFE3P19532 575 aaPredicted RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 PTPN11Q06124 597 aaPredicted RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 MXD4Q14582 209 aaPredicted RBP14.05□□□□□ -0.16
VPS54-203ENST00000409558 TRIM72Q6ZMU5 477 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms