RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF132P52740 706 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 COPS2P61201 443 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 RPL7AP62424 266 aaKnown RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 HADHQ16836 314 aaKnown RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 RHBDF2Q6PJF5 856 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 C17orf50Q8WW18 174 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 COPS5Q92905 334 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 GPR20Q99678 358 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 CPSF3Q9UKF6 684 aaKnown RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 ZNFX1Q9P2E3 1918 aaKnown RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 GOLGA8SH3BPF8 625 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 CHUKO15111 745 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 ASAP2O43150 1006 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 HBP1O60381 514 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 IL18RAPO95256 599 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 KLF1Q13351 362 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 QPCTQ16769 361 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 HSDL1Q3SXM5 330 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 L3MBTL3Q96JM7 780 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 HERPUD2Q9BSE4 406 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 IQCGQ9H095 443 aaKnown RBP10.15□□□□□ -0.78
COL6A3-204ENST00000392003 POLR2AP24928 1970 aaKnown RBP10.15□□□□□ -0.79
COL6A3-204ENST00000392003 TTLL13PA6NNM8 815 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 O00370 1275 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 FSBPO95073 299 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 NEFHP12036 1026 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 KRT10P13645 584 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 IVDP26440 423 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 STAT4Q14765 748 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 P3H1Q32P28 736 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 MFSD7Q6UXD7 560 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 SPOCD1Q6ZMY3 1216 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 MGARPQ8TDB4 240 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 CFAP57Q96MR6 1250 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 SLITRK1Q96PX8 696 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 PPP1R16BQ96T49 567 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 PRMT1Q99873 361 aaKnown RBP10.15□□□□□ -0.79
COL6A3-204ENST00000392003 R3HDMLQ9H3Y0 253 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 NKIRAS1Q9NYS0 192 aa10.15□□□□□ -0.79
COL6A3-204ENST00000392003 PSMA2P25787 234 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 GTF2A2P52657 109 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 PLCB4Q15147 1175 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 ATP13A4Q4VNC1 1196 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 EFCAB12Q6NXP0 572 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 PARP9Q8IXQ6 854 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 DHRS1Q96LJ7 313 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 AAASQ9NRG9 546 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 NINJ2Q9NZG7 142 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 GINS2Q9Y248 185 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 ATP2C2O75185 946 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 CDH16O75309 829 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 CELF2O95319 508 aaKnown RBP10.14□□□□□ -0.79
COL6A3-204ENST00000392003 P4HA1P13674 534 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 PHKA2P46019 1235 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 WLSQ5T9L3 541 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 CYP4F22Q6NT55 531 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 C6orf89Q6UWU4 347 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 EXOC3L1Q86VI1 746 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 UBR7Q8N806 425 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 ANKRD42Q8N9B4 389 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 TRAPPC12Q8WVT3 735 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 CLIP3Q96DZ5 547 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 RBM15Q96T37 977 aaKnown RBP eCLIP10.14□□□□□ -0.79
COL6A3-204ENST00000392003 PDGFCQ9NRA1 345 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 PCDHGC3Q9UN70 934 aa10.14□□□□□ -0.79
COL6A3-204ENST00000392003 F8VP50 259 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 LIASO43766 372 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 B4GALT4O60513 344 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ARIH2O95376 493 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 IFNB1P01574 187 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 KRT3P12035 628 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 MAGEA4P43358 317 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ARSEP51690 589 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TNFAIP2Q03169 654 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 CNGA2Q16280 664 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TFDP3Q5H9I0 405 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 UBAP2Q5T6F2 1119 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 CYP4A22Q5TCH4 519 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 SMYD5Q6GMV2 418 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ARMCX2Q7L311 632 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 CCDC13Q8IYE1 715 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 GTF3C2Q8WUA4 911 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 C9orf72Q96LT7 481 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TTC25Q96NG3 672 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 GBA2Q9HCG7 927 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 SAYSD1Q9NPB0 183 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 PRMT7Q9NVM4 692 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 SPATA7Q9P0W8 599 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TMEM120BA0PK00 339 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 SGK1O00141 431 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 KRT7P08729 469 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 BRAFP15056 766 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ADORA2AP29274 412 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ABL2P42684 1182 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 CLCN3P51790 818 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 PSMC1P62191 440 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 GPS1Q13098 491 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 WDR72Q3MJ13 1102 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 CDR2LQ86X02 465 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 LRRC34Q8IZ02 419 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms