RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 FAM228BP0C875 321 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 HOXB6P17509 224 aaKnown RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 PLET1Q6UQ28 207 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 RAB11FIP2Q7L804 512 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CAMK1DQ8IU85 385 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ACOT12Q8WYK0 555 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ADI1Q9BV57 179 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 KLHL11Q9NVR0 708 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 MBD4O95243 580 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ATP6V1B2P21281 511 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 TFCP2Q12800 502 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CYP51A1Q16850 503 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 OR6Y1Q8NGX8 325 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ZNF507Q8TCN5 953 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 AGR3Q8TD06 166 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 EEF1AKMT1Q8WVE0 214 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ASB12Q8WXK4 309 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 HPS3Q969F9 1004 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 FAM149B1Q96BN6 582 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 RACGAP1Q9H0H5 632 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 TMEM5Q9Y2B1 443 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CCDC61Q9Y6R9 512 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PCDH11XQ9BZA7 1347 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ATG7O95352 703 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 POLD3Q15054 466 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 LMBRD2Q68DH5 695 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 TTC39CQ8N584 583 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 RNPC3Q96LT9 517 aaKnown RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 NDNQ99608 321 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 NUP85Q9BW27 656 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 TRPV5Q9NQA5 729 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 E7EWF7 191 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PSMD14O00487 310 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CLOCKO15516 846 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 STIP1P31948 543 aaKnown RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 CENPAP49450 140 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 GFPT1Q06210 699 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 SLC29A2Q14542 456 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PSMD5Q16401 504 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ZNF827Q17R98 1081 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 KCNK18Q7Z418 384 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 TCEAL3Q969E4 200 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 MYDGFQ969H8 173 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 VMP1Q96GC9 406 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PICK1Q9NRD5 415 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 SLC25A13Q9UJS0 675 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 NUDT5Q9UKK9 219 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 KCNJ14Q9UNX9 436 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PA2G4Q9UQ80 394 aaKnown RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 ZNF451Q9Y4E5 1061 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ADCY9O60503 1353 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 SPRP35270 261 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 NPEPPSP55786 919 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 VAC14Q08AM6 782 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 FAM47CQ5HY64 1035 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 METTL13Q8N6R0 699 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 SNX31Q8N9S9 440 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ASAP3Q8TDY4 903 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 BTBD10Q9BSF8 475 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 HDAC6Q9UBN7 1215 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 C9orf84Q5VXU9 1444 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 WIZO95785 1651 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 MYCLP12524 364 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 ATP6V1C1P21283 382 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CCNE1P24864 410 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 MAPK1P28482 360 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ZNF574Q6ZN55 896 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 STOX1Q6ZVD7 989 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PROSER1Q86XN7 944 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 HDDC3Q8N4P3 179 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 KYQ8NBH2 561 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 NLRP3Q96P20 1036 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 GGA1Q9UJY5 639 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CHKBQ9Y259 395 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 DDX39AO00148 427 aaKnown RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 THEGLP0DJG4 465 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 RGS7P49802 495 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 RPS7P62081 194 aaKnown RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 CCZ1BP86790 482 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 CCZ1P86791 482 aaPredicted RBP9.05□□□□□ -0.96
LIG3-202ENST00000378526 AFTPHQ6ULP2 937 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 SH2D3CQ8N5H7 860 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 GAL3ST3Q96A11 431 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 MED28Q9H204 178 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 PCDH12Q9NPG4 1184 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ADAMTS1Q9UHI8 967 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 LOC110117498-PIK3R3F6TDL0 507 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 UQCRBP14927 111 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 TBXAS1P24557 533 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 PTK7Q13308 1070 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 RASA2Q15283 850 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 PHKG1Q16816 387 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 TTC30BQ8N4P2 665 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 LINS1Q8NG48 757 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 TUBGCP5Q96RT8 1024 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 CLCC1Q96S66 551 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 THUMPD3Q9BV44 507 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 RERGLQ9H628 205 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 ARMC7Q9H6L4 198 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 VPS9D1Q9Y2B5 631 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms