RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CT47A1Q5JQC4 288 aaPredicted RBP14.24□□□□□ -0.13
VPS28-202ENST00000377348 C4orf50Q6ZRC1 276 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 PDZD4Q76G19 769 aaPredicted RBP14.24□□□□□ -0.13
VPS28-202ENST00000377348 DNAJB7Q7Z6W7 309 aaPredicted RBP14.24□□□□□ -0.13
VPS28-202ENST00000377348 ZDHHC14Q8IZN3 488 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 LMO3Q8TAP4 145 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 WHAMMQ8TF30 809 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 FGF13Q92913 245 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 PSMG2Q969U7 264 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 ACSF2Q96CM8 615 aaPredicted RBP14.24□□□□□ -0.13
VPS28-202ENST00000377348 FUBP3Q96I24 572 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS28-202ENST00000377348 LRRC3Q9BY71 257 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 B3GNT5Q9BYG0 378 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 ZNF518BQ9C0D4 1074 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 CYP3A43Q9HB55 503 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 ABCB6Q9NP58 842 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 AVENQ9NQS1 362 aaPredicted RBP14.24□□□□□ -0.13
VPS28-202ENST00000377348 ASAH2Q9NR71 780 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 DOCK8Q8NF50 2099 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 PMM2O15305 246 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 CILPO75339 1184 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 MOSPD3O75425 235 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 LAMP2P13473 410 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 CCDC130P13994 396 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 MTIF2P46199 727 aaKnown RBP14.23□□□□□ -0.13
VPS28-202ENST00000377348 CACNA2D1P54289 1103 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 EPHA5P54756 1037 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 TYRO3Q06418 890 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 CUL2Q13617 745 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 VEPH1Q14D04 833 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 MAPRE1Q15691 268 aaKnown RBP14.23□□□□□ -0.13
VPS28-202ENST00000377348 ZNF394Q53GI3 561 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 CYP4A22Q5TCH4 519 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 ITIH5Q86UX2 942 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 UNC93AQ86WB7 457 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 NPAS3Q8IXF0 933 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 C12orf29Q8N999 325 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 ENOX1Q8TC92 643 aaKnown RBP14.23□□□□□ -0.13
VPS28-202ENST00000377348 KAT5Q92993 513 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 MCRS1Q96EZ8 462 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 TNIP3Q96KP6 325 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 ELOVL4Q9GZR5 314 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 CISHQ9NSE2 258 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 FAM49BQ9NUQ9 324 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 TMEM30AQ9NV96 361 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.23□□□□□ -0.132e-7■■■■□ 26
VPS28-202ENST00000377348 CDH7Q9ULB5 785 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 NFE2L3Q9Y4A8 694 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 ASB3Q9Y575 518 aa14.23□□□□□ -0.13
VPS28-202ENST00000377348 A0A1W2PRU2 124 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 P4HA2O15460 535 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 GRIK1P39086 918 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 MAGEA11P43364 429 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 RPL10AP62906 217 aaKnown RBP14.22□□□□□ -0.13
VPS28-202ENST00000377348 CETN1Q12798 172 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 TEAD2Q15562 447 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 TAF12Q16514 161 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 PAQR9Q6ZVX9 377 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 ARHGEF19Q8IW93 802 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 FAM114A1Q8IWE2 563 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 CRYBG2Q8N1P7 616 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 PLCD3Q8N3E9 789 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 EHBP1Q8NDI1 1231 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 SHKBP1Q8TBC3 707 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 RSAD2Q8WXG1 361 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 NT5C1BQ96P26 610 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 CRACR2AQ9BSW2 395 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 MED10Q9BTT4 135 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 NT5C1AQ9BXI3 368 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 INTS2Q9H0H0 1204 aaKnown RBP14.22□□□□□ -0.13
VPS28-202ENST00000377348 EPS15L1Q9UBC2 864 aa14.22□□□□□ -0.13
VPS28-202ENST00000377348 MAGED2Q9UNF1 606 aaPredicted RBP14.22□□□□□ -0.13
VPS28-202ENST00000377348 SLC38A8A6NNN8 435 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 KCNJ18B7U540 433 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 F8VP50 259 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 ZNF197O14709 1029 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 PRKCSHP14314 528 aaPredicted RBP14.21□□□□□ -0.13
VPS28-202ENST00000377348 HMGA1P17096 107 aaKnown RBP14.21□□□□□ -0.13
VPS28-202ENST00000377348 GABRR2P28476 465 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 ADORA2BP29275 332 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 APBA1Q02410 837 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 KCNJ12Q14500 433 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 MAN2A1Q16706 1144 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 ANO6Q4KMQ2 910 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 STXBP5Q5T5C0 1151 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 VSTM1Q6UX27 236 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 GAREM2Q75VX8 874 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 RRAGAQ7L523 313 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 FAM35AQ86V20 835 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 FUKQ8N0W3 1084 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 PPM1KQ8N3J5 372 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 SLC4A11Q8NBS3 891 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 LEMD2Q8NC56 503 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 SLC2A14Q8TDB8 520 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 FAXDC2Q96IV6 333 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 ATXN3LQ9H3M9 355 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 SMOC2Q9H3U7 446 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 EPHX3Q9H6B9 360 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 KCNK12Q9HB15 430 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 IL21Q9HBE4 155 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms