RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 MYL12BO14950 172 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 DGKIO75912 1065 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 HOXA13P31271 388 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 NOL6Q9H6R4 1146 aaKnown RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 POLR1BQ9H9Y6 1135 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 HMGXB3Q12766 1538 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 KLHL41O60662 606 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 SGO1Q5FBB7 561 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 PCNX4Q63HM2 1172 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 APBB2Q92870 758 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 NMD3Q96D46 503 aaKnown RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 NRDE2Q9H7Z3 1164 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 C2orf81A6NN90 581 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 EIF2S3P41091 472 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CASP4P49662 377 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 R3HDM1Q15032 1099 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 GALNTL6Q49A17 601 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC80Q76M96 950 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 C11orf96Q7Z7L8 435 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 RMDN3Q96TC7 470 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 RNF112Q9ULX5 631 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SIK3Q9Y2K2 1263 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 F8VZ95 297 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ZBTB5O15062 677 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ERN1O75460 977 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 PGM3O95394 542 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 EPB42P16452 691 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 C21orf59P57076 290 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 GPR162Q16538 588 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF284Q2VY69 593 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC157Q569K6 752 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 RSAD1Q9HA92 442 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 BTBD3Q9Y2F9 522 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ZBTB39O15060 712 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SLC16A3O15427 465 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SLC16A2P36021 539 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CDC16Q13042 620 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CYB5D1Q6P9G0 228 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ULK3Q6PHR2 472 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 DHX40Q8IX18 779 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 KIF2BQ8N4N8 673 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SLC7A14Q8TBB6 771 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 KLHL28Q9NXS3 571 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 PVALEFA0A1B0GWK0 134 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 A1BGP04217 495 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ARF5P84085 180 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 GPR63Q9BZJ6 419 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 COQ6Q9Y2Z9 468 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 TPRKBQ9Y3C4 175 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 FKBP6O75344 327 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ATP1A1P05023 1023 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ASNSP08243 561 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC166P0CW27 439 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SFSWAPQ12872 951 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 NAPEPLDQ6IQ20 393 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 GAS2L3Q86XJ1 694 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 STAP2Q9UGK3 403 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 TRMT6Q9UJA5 497 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 PLEKHG1Q9ULL1 1385 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 EEF2KO00418 725 aaKnown RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 RASA1P20936 1047 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 PRCPP42785 496 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ULK2Q8IYT8 1036 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC33Q8N5R6 958 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 FAM129BQ96TA1 746 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SCP2P22307 547 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SERPINB5P36952 375 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF513Q8N8E2 541 aaPredicted RBP12.06□□□□□ -0.48
VPS13A-205ENST00000376636 GPC1P35052 558 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 EFNA5P52803 228 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 AKIRIN2Q53H80 203 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ZFP1Q6P2D0 407 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 GLYCTKQ8IVS8 523 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 C4orf33Q8N1A6 199 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 FAM210AQ96ND0 272 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF682O95780 498 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 PTPN7P35236 360 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 SOX11P35716 441 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 CORO7P57737 925 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 MIEF1Q9NQG6 463 aa12.06□□□□□ -0.48
VPS13A-205ENST00000376636 MGAT4DA6NG13 374 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 NPR3P17342 541 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 FAM98BQ52LJ0 330 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 MZT2AQ6P582 158 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 C1orf131Q8NDD1 294 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 COA7Q96BR5 231 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 EDC3Q96F86 508 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 MAGEB18Q96M61 343 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ACAD9Q9H845 621 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 QARSP47897 775 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 KCNJ6P48051 423 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 RHAGQ02094 409 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ATP6AP1LQ52LC2 224 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 USP17L2Q6R6M4 530 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 EEPD1Q7L9B9 569 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 KCTD14Q9BQ13 255 aaPredicted RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 BCS1LQ9Y276 419 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SSNA1O43805 119 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 EIF2AK2P19525 551 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 GMFBP60983 142 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms