RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 PNPLA4P41247 253 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 ZNF132P52740 706 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 TRADDQ15628 312 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 C9orf57Q5W0N0 161 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 TRIM72Q6ZMU5 477 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 SCLYQ96I15 445 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 UBN1Q9NPG3 1134 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 HMGXB4Q9UGU5 601 aa13.93□□□□□ -0.18
SQSTM1-201ENST00000360718 ANKRD62A6NC57 917 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 FTLP02792 175 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ZNF394Q53GI3 561 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ZNF598Q86UK7 904 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 PAWRQ96IZ0 340 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ZSWIM1Q9BR11 485 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 PPP1R12CQ9BZL4 782 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 DDX47Q9H0S4 455 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 RAB17Q9H0T7 212 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 GOLPH3Q9H4A6 298 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 NCANO14594 1321 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 GOLGA6L10A0A0M3HER8 536 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 C9IYK1 514 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 PITPNM1O00562 1244 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 PIRO00625 290 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 SPTLC1O15269 473 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 THP07101 528 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ABCB4P21439 1286 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ECHS1P30084 290 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 SSTR3P32745 418 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 SCNN1GP51170 649 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 CCL23P55773 120 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ORC1Q13415 861 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 SPDYCQ5MJ68 293 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 AGBL2Q5U5Z8 902 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 PPP1R2P3Q6NXS1 205 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 ECHDC2Q86YB7 292 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 DBF4BQ8NFT6 615 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 SLC35G2Q8TBE7 412 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 TWNKQ96RR1 684 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 FTHL17Q9BXU8 183 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 RABEP2Q9H5N1 569 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 RGS18Q9NS28 235 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 GGA2Q9UJY4 613 aa13.92□□□□□ -0.18
SQSTM1-201ENST00000360718 GUCY1A3Q02108 690 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 PACS2Q86VP3 889 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 ZNF606Q8WXB4 792 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 CENPHQ9H3R5 247 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 HIPK3Q9H422 1215 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 AMACRQ9UHK6 382 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 NME7Q9Y5B8 376 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 SNX9Q9Y5X1 595 aa13.91□□□□□ -0.18
SQSTM1-201ENST00000360718 DCDC2CA8MYV0 355 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 MED7O43513 233 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 CYP2C18P33260 490 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 TAF6P49848 677 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 CDR1P51861 262 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 LRRC26Q2I0M4 334 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 CLEC16AQ2KHT3 1053 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 SV2CQ496J9 727 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 PLEKHG4Q58EX7 1191 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 C1orf53Q5VUE5 145 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 ACAD10Q6JQN1 1059 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 FAM43BQ6ZT52 329 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 OTUD6BQ8N6M0 293 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 C3orf20Q8ND61 904 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 UBLCP1Q8WVY7 318 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 SEC14L1Q92503 715 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 PAAF1Q9BRP4 392 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 DNAI2Q9GZS0 605 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 CARD9Q9H257 536 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 RSAD1Q9HA92 442 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 ATP11BQ9Y2G3 1177 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 H0YGN5 161 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 DAPK3O43293 454 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 BUB1BO60566 1050 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 POMCP01189 267 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 PAEPP09466 180 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 CD19P15391 556 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 EIF3BP55884 814 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 GPC5P78333 572 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 ODF2Q5BJF6 829 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 YTHDF3Q7Z739 585 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 NLRP14Q86W24 1093 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 DDX42Q86XP3 938 aaKnown RBP eCLIP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 RHOT2Q8IXI1 618 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 ZNF473Q8WTR7 871 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 TFAP2BQ92481 460 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 VWCEQ96DN2 955 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 TOX2Q96NM4 488 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 TSPYL2Q9H2G4 693 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 BARX2Q9UMQ3 279 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 CEP83Q9Y592 693 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 NFS1Q9Y697 457 aa13.9□□□□□ -0.18
SQSTM1-201ENST00000360718 KPNA7A9QM74 516 aa13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 CILPO75339 1184 aa13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 EOMESO95936 686 aa13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 FAM107AO95990 144 aa13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 FGGP02679 453 aa13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 LRPAP1P30533 357 aa13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 NSFP46459 744 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-201ENST00000360718 LIG3P49916 1009 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms