RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 FBXO44Q9H4M3 255 aa17.15■□□□□ 0.34
SMARCA4-201ENST00000344626 GTF3C4Q9UKN8 822 aa17.15■□□□□ 0.34
SMARCA4-201ENST00000344626 GTPBP10A4D1E9 387 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SOWAHBA6NEL2 793 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SYNCRIPO60506 623 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 LSM8O95777 96 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 RAP1GAPP47736 663 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 BST2Q10589 180 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 RASSF3Q86WH2 238 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 USP33Q8TEY7 942 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC7A5P2Q9GIP4 190 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 COPEO14579 308 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 MAFO75444 373 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 ATXN3P54252 364 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 MAP4K3Q8IVH8 894 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 BRSK2Q8IWQ3 736 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 ATP11CQ8NB49 1132 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SEMA6BQ9H3T3 888 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 ZNF214Q9UL59 606 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 A0A087WUV0 522 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 KPNA7A9QM74 516 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 KCNA3P22001 575 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 PSMD6Q15008 389 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 DBF4BQ8NFT6 615 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 USP13Q92995 863 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 EXT2Q93063 718 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 PBXIP1Q96AQ6 731 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 ARHGEF26Q96DR7 871 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 RABEP2Q9H5N1 569 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 TLR8Q9NR97 1041 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 TMEM51Q9NW97 253 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 BARX2Q9UMQ3 279 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SF3B1O75533 1304 aaKnown RBP eCLIP17.14■□□□□ 0.334e-6■■■■■ 127.4
SMARCA4-201ENST00000344626 CNTNAP2Q9UHC6 1331 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SUN1O94901 812 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC39A12Q504Y0 691 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 TTI2Q6NXR4 508 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 CHP1Q99653 195 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 DRC3Q9H069 523 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 TXNRD2Q9NNW7 524 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 PLA2G4CQ9UP65 541 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 TRAF3IP3Q9Y228 551 aa17.14■□□□□ 0.33
SMARCA4-201ENST00000344626 LACTBL1A8MY62 500 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 ZNF697Q5TEC3 545 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 IZUMO3Q5VZ72 239 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 KCTD16Q68DU8 428 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 GPR20Q99678 358 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 PARD6BQ9BYG5 372 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 CISHQ9NSE2 258 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 NDFIP2Q9NV92 336 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 UXTQ9UBK9 157 aaPredicted RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 PACSIN2Q9UNF0 486 aaPredicted RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 FXR1P51114 621 aaKnown RBP eCLIP17.13■□□□□ 0.333e-6■■■□□ 17.4
SMARCA4-201ENST00000344626 RTP1P59025 263 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 PDIA2Q13087 525 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 SPATS2Q86XZ4 545 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 FPGSQ05932 587 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 PTPN11Q06124 597 aaPredicted RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 SV2AQ7L0J3 742 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 ZNF467Q7Z7K2 595 aaPredicted RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 SH3KBP1Q96B97 665 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 PADI3Q9ULW8 664 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 UBA6A0AVT1 1052 aaPredicted RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 ADCY6O43306 1168 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 DNAJC6O75061 913 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 ENDOD1O94919 500 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 SENP8Q96LD8 212 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 DDX47Q9H0S4 455 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 KLHL11Q9NVR0 708 aa17.13■□□□□ 0.33
SMARCA4-201ENST00000344626 ETFBP38117 255 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC12A3P55017 1021 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 PPP2R2DQ66LE6 453 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 GJB7Q6PEY0 223 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 CCDC149Q6ZUS6 474 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 TMEM86AQ8N2M4 240 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 TAS1R2Q8TE23 839 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 CORO1BQ9BR76 489 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 HACD3Q9P035 362 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 COL1A2P08123 1366 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 EPHB2P29323 1055 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 FOXN3O00409 490 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 IGF2BP3O00425 579 aaKnown RBP eCLIP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 RNASEH1O60930 286 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 NOL3O60936 208 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 STARD3Q14849 445 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 CACUL1Q86Y37 369 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 AKAP3O75969 853 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 PARNO95453 639 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 GLRA2P23416 452 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 ZNF200P98182 395 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 TTC19Q6DKK2 380 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 ACSF2Q96CM8 615 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 OLA1Q9NTK5 396 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 GABRQQ9UN88 632 aa17.12■□□□□ 0.33
SMARCA4-201ENST00000344626 ATP9BO43861 1147 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 FAM105AQ9NUU6 356 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC30A1Q9Y6M5 507 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SMAPO00193 183 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 CLTBP09497 229 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms