RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SERPINB6P35237 376 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 MXI1P50539 228 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 AQP5P55064 265 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 SF3B3Q15393 1217 aaKnown RBP14.13□□□□□ -0.15
SKA3-201ENST00000298260 SPDYAQ5MJ70 313 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 SYDE2Q5VT97 1194 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 TXNRD3NBQ6F5E7 133 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 ZFPM1Q8IX07 1006 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 ZNF713Q8N859 430 aaPredicted RBP14.13□□□□□ -0.15
SKA3-201ENST00000298260 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.13□□□□□ -0.15
SKA3-201ENST00000298260 ZNF398Q8TD17 642 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 FAM172AQ8WUF8 416 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 RILPQ96NA2 401 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 MMP19Q99542 508 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 C11orf70Q9BRQ4 267 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 ANKRD2Q9GZV1 360 aa14.13□□□□□ -0.15
SKA3-201ENST00000298260 A0A088AWK7 358 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 K7ENM7 598 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 DDX39AO00148 427 aaKnown RBP14.12□□□□□ -0.15
SKA3-201ENST00000298260 ADRB2P07550 413 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 GTF2H1P32780 548 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 COG7P83436 770 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 KRT72Q14CN4 511 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 TLR1Q15399 786 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 TRMT5Q32P41 509 aaKnown RBP14.12□□□□□ -0.15
SKA3-201ENST00000298260 BBS9Q3SYG4 887 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 C6orf163Q5TEZ5 329 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 ARHGAP24Q8N264 748 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 PIP4K2CQ8TBX8 421 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 PYROXD1Q8WU10 500 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 MZB1Q8WU39 189 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 MIS12Q9H081 205 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 S100A14Q9HCY8 104 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 LAMB2P55268 1798 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 TMEM150BA6NC51 233 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 SPECC1L-ADORA2AF8WAN1 911 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 SGK1O00141 431 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 MAGEC1O60732 1142 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 SNHG28P0DPA3 235 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 GDF10P55107 478 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 ZNF200P98182 395 aaPredicted RBP14.12□□□□□ -0.15
SKA3-201ENST00000298260 FOLH1Q04609 750 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 FAAP100Q0VG06 881 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 TBL3Q12788 808 aaKnown RBP14.12□□□□□ -0.15
SKA3-201ENST00000298260 TCEAL1Q15170 157 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 MYLK3Q32MK0 819 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 ACAD10Q6JQN1 1059 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 UGT2A3Q6UWM9 527 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 CBWD2Q8IUF1 395 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 RELL1Q8IUW5 271 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 FBXO36Q8NEA4 188 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 DDX1Q92499 740 aaKnown RBP14.12□□□□□ -0.15
SKA3-201ENST00000298260 DGCR14Q96DF8 476 aaKnown RBP14.12□□□□□ -0.15
SKA3-201ENST00000298260 SENP1Q9P0U3 644 aa14.12□□□□□ -0.15
SKA3-201ENST00000298260 F8W8V4 182 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 H0YIN7 160 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 EIF3DO15371 548 aaKnown RBP eCLIP14.11□□□□□ -0.15
SKA3-201ENST00000298260 LIASO43766 372 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 RPS6KA4O75676 772 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 MT-ND3P03897 115 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 SLC18A1P54219 525 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 EMP3P54852 163 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 RHBDL3P58872 404 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 EFHC2Q5JST6 749 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 TRAPPC3LQ5T215 181 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 MFSD7Q6UXD7 560 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 DENND5BQ6ZUT9 1274 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 IGDCC3Q8IVU1 814 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 TAS1R2Q8TE23 839 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 ERLEC1Q96DZ1 483 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 PRICKLE1Q96MT3 831 aaPredicted RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 SETDB2Q96T68 719 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 VPS11Q9H270 941 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 THSD7AQ9UPZ6 1657 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 TTLL13PA6NNM8 815 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 H3BSA7 217 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 ALOX15BO15296 676 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 NELFEP18615 380 aaKnown RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 VARSP26640 1264 aaKnown RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 MAN1A1P33908 653 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 MSX2P35548 267 aaPredicted RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 CHN2P52757 468 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 ATXN3P54252 364 aaPredicted RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 BST1Q10588 318 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 RABGAP1LQ5R372 815 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 RNASEH2BQ5TBB1 312 aaKnown RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 LMBRD2Q68DH5 695 aaPredicted RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 LRRC8BQ6P9F7 803 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 CCDC174Q6PII3 467 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 DCAKDQ8WVC6 231 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 POLR3CQ9BUI4 534 aaPredicted RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 SLC13A1Q9BZW2 595 aa14.11□□□□□ -0.15
SKA3-201ENST00000298260 TUT1Q9H6E5 874 aaKnown RBP14.11□□□□□ -0.15
SKA3-201ENST00000298260 LOC100653049A0A140TA62 436 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 FOXD2O60548 495 aaPredicted RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 KRT34O76011 436 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 RAG1P15918 1043 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 PMLP29590 882 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CENPCQ03188 943 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CCNIQ14094 377 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms