RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PSD3Q9NYI0 1048 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 FAM47DPA6NHR8 397 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 C2CD6Q53TS8 623 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 PCNX4Q63HM2 1172 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 OR2W6PQ8NHA6 318 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 SEPT8Q92599 483 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 ZCCHC17Q9NP64 241 aaKnown RBP17.99■□□□□ 0.47
SHANK1-201ENST00000293441 DIP2BQ9P265 1576 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 STX7O15400 261 aaKnown RBP17.99■□□□□ 0.47
SHANK1-201ENST00000293441 MTSS1O43312 755 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 HOXA2O43364 376 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 EGFRP00533 1210 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 TROAPQ12815 778 aa17.99■□□□□ 0.47
SHANK1-201ENST00000293441 LZTS3O60299 673 aaPredicted RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CENPCQ03188 943 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 AGO4Q9HCK5 861 aaKnown RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 EIF4E1BA6NMX2 242 aaKnown RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CYP2C8P10632 490 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 SREBF1P36956 1147 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 MFSD4BQ5TF39 518 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 MROH9Q5TGP6 573 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 LINC00523Q86TU6 105 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 GMCL1P1Q8NEA9 526 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 C6orf203Q9P0P8 240 aaPredicted RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 TFR2Q9UP52 801 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 ANXA9O76027 345 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 PBLDP30039 288 aaPredicted RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CXCL9Q07325 125 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 RAD9BQ6WBX8 426 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 IFNEQ86WN2 208 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 SH2D3CQ8N5H7 860 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 OSMRQ99650 979 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 FAM129AQ9BZQ8 928 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CHST12Q9NRB3 414 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 TMX2Q9Y320 296 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CDH16O75309 829 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 BTKQ06187 659 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 C16orf87Q6PH81 154 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 PPIL6Q8IXY8 311 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 EFCAB14O75071 495 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CSDE1O75534 798 aaKnown RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 FKBP9O95302 570 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 PON1P27169 355 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 RAD23BP54727 409 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 FKBP9P1Q75LS8 142 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 FAM162AQ96A26 154 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 C2orf81A6NN90 581 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CLASP2O75122 1294 aaKnown RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CCZ1BP86790 482 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CCZ1P86791 482 aaPredicted RBP17.98■□□□□ 0.47
SHANK1-201ENST00000293441 RABGAP1LQ5R372 815 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 CD302Q8IX05 232 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 GIMAP4Q9NUV9 329 aa17.98■□□□□ 0.47
SHANK1-201ENST00000293441 SNRPAP09012 282 aaKnown RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 WEE1P30291 646 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 PTPN7P35236 360 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 EFEMP1Q12805 493 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 MTFR1Q15390 333 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 ADNPQ9H2P0 1102 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 A0A087WZ62 844 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 E2F4Q16254 413 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 TC2NQ8N9U0 490 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 FDXACB1Q9BRP7 624 aaPredicted RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 IL25Q9H293 177 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 IL1RL2Q9HB29 575 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 SETD4Q9NVD3 440 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 KDM1AO60341 852 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 HSPA1AP0DMV8 641 aaKnown RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 HSPA1BP0DMV9 641 aaKnown RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 VDRP11473 427 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 MAP1SQ66K74 1059 aaPredicted RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 E4F1Q66K89 784 aaPredicted RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 TXNRD3Q86VQ6 643 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 NMRK2Q9NPI5 230 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 CTCFP49711 727 aaPredicted RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 POU4F1Q01851 419 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 CYFIP2Q96F07 1278 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 CBWD1Q9BRT8 395 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 SPATC1LQ9H0A9 340 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 WWOXQ9NZC7 414 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 SPASTQ9UBP0 616 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 TRMT6Q9UJA5 497 aaKnown RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 PPP2R3BQ9Y5P8 575 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 SRP72O76094 671 aaKnown RBP17.97■□□□□ 0.47
SHANK1-201ENST00000293441 AP1ARQ63HQ0 302 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 DDI1Q8WTU0 396 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 GMCL1Q96IK5 515 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 PKD2L2Q9NZM6 624 aa17.97■□□□□ 0.47
SHANK1-201ENST00000293441 PQBP1O60828 265 aaKnown RBP17.96■□□□□ 0.47
SHANK1-201ENST00000293441 PRKCQQ04759 706 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 SPATS2LQ9NUQ6 558 aaKnown RBP17.96■□□□□ 0.47
SHANK1-201ENST00000293441 FRMPD1Q5SYB0 1578 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 COILP38432 576 aaPredicted RBP17.96■□□□□ 0.47
SHANK1-201ENST00000293441 EPHB3P54753 998 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 MED21Q13503 144 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 UGT3A1Q6NUS8 523 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 LMTK2Q8IWU2 1503 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 UCMAQ8WVF2 138 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 RANBP17Q9H2T7 1088 aaKnown RBP17.96■□□□□ 0.47
SHANK1-201ENST00000293441 KCNF1Q9H3M0 494 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms