RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ACTL9Q8TC94 416 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 CCT6BQ92526 530 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 LHX5Q9H2C1 402 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 MROH8Q9H579 483 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 PDZD7Q9H5P4 517 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 CCDC134Q9H6E4 229 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 PRMT7Q9NVM4 692 aaPredicted RBP19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 SAMD15Q9P1V8 674 aa19.32■□□□□ 0.68
SHKBP1-201ENST00000291842 SBF1O95248 1867 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 M0QYV0 167 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 ASAP2O43150 1006 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 MICAL2O94851 1124 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 ARF4P18085 180 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 GJA5P36382 358 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 OTUD4Q01804 1114 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 PTPN11Q06124 597 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 SLC10A6Q3KNW5 377 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 DRICH1Q6PGQ1 229 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 HEXIM2Q96MH2 286 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 CCDC77Q9BR77 488 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 FGFR1OP2Q9NVK5 253 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 GGT7Q9UJ14 662 aa19.31■□□□□ 0.68
SHKBP1-201ENST00000291842 POC1B-GALNT4F8VUJ3 575 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 CDH16O75309 829 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 ZBED8Q8IZ13 594 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 AFG1LQ8WV93 481 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 HSPH1Q92598 858 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 TMEM176AQ96HP8 235 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 AGAP1Q9UPQ3 857 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 DRG1Q9Y295 367 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 EXOC1LA0A1B0GW35 172 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 CILPO75339 1184 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 TCEA3O75764 348 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 RAB6CQ53S08 254 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 SH3PXD2AQ5TCZ1 1133 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 MAP1SQ66K74 1059 aaPredicted RBP19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 FASTKD5Q7L8L6 764 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 CCDC125Q86Z20 511 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 ANKMY2Q8IV38 441 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 CNPY4Q8N129 248 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 ANKS4BQ8N8V4 417 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 CXorf38Q8TB03 319 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 CCHCR1Q8TD31 782 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 HPDLQ96IR7 371 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 RAB6CQ9H0N0 254 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 VPS37BQ9H9H4 285 aa19.3■□□□□ 0.68
SHKBP1-201ENST00000291842 ITGAVP06756 1048 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 KDELR1P24390 212 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 HNRNPH1P31943 449 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 STAT4Q14765 748 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 RNASEH2BQ5TBB1 312 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 RELL1Q8IUW5 271 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 KCTD6Q8NC69 237 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 NLRP7Q8WX94 980 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 NKD2Q969F2 451 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 ASB14A6NK59 587 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 CCT8L1PA6NM43 557 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 RASA4BC9J798 803 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 RASA4O43374 803 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 PIAS1O75925 651 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 GCAP28676 217 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 PTPN7P35236 360 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 ADCYAP1R1P41586 468 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 SCTRP47872 440 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 NRLP54845 237 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 MKRN3Q13064 507 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 ZKSCAN8Q15776 578 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 HADHQ16836 314 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 NUGGCQ68CJ6 796 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 TAPT1Q6NXT6 567 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 ILDR2Q71H61 639 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 POLNQ7Z5Q5 900 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 SLC35B2Q8TB61 432 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 PPP1R13LQ8WUF5 828 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 CFAP57Q96MR6 1250 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 CXCL16Q9H2A7 254 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 LGALS13Q9UHV8 139 aa19.29■□□□□ 0.68
SHKBP1-201ENST00000291842 GRAP2O75791 330 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 MIPP30301 263 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 PDIA2Q13087 525 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 FAM102AQ5T9C2 384 aaPredicted RBP19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 CALN1Q9BXU9 219 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 SPAG7O75391 227 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 KRT7P08729 469 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 MCF2P10911 925 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 MYO1EQ12965 1108 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 TMEM132DQ14C87 1099 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 ZNF484Q5JVG2 852 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 ANKRD22Q5VYY1 191 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 MAMDC4Q6UXC1 1216 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 RFX6Q8HWS3 928 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 C12orf29Q8N999 325 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 PIWIL1Q96J94 861 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 PAIP2Q9BPZ3 127 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 KIF9Q9HAQ2 790 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 GINS2Q9Y248 185 aa19.28■□□□□ 0.68
SHKBP1-201ENST00000291842 ADORA2AP29274 412 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 GPD2P43304 727 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms