RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NPHP3-ACAD11A0A0J9YXS1 232 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 FAM187AA6NFU0 413 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 P4HBP07237 508 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CYP2C19P33261 490 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SERPINB5P36952 375 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 HNMTP50135 292 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CAMK1Q14012 370 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 KRT35Q92764 455 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SRP68Q9UHB9 627 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CNPP09543 421 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 AKR1B1P15121 316 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 DGKDQ16760 1214 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 KIRREL3Q8IZU9 778 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CARNMT1Q8N4J0 409 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 MS4A14Q96JA4 679 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 PRRG3Q9BZD7 231 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 KCTD10Q9H3F6 313 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 AAASQ9NRG9 546 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CHMP2BQ9UQN3 213 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 PCDHGA3Q9Y5H0 932 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 RPS6KA5O75582 802 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 KRT33AO76009 404 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SPRP35270 261 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 HIRAP54198 1017 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 RBP5P82980 135 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 TGM3Q08188 693 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ADGRF4Q8IZF3 695 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ERLEC1Q96DZ1 483 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ANTXR1Q9H6X2 564 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CDY2AQ9Y6F7 541 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CDY1Q9Y6F8 540 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF57Q68EA5 555 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 MTSS1LQ765P7 747 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 RNPC3Q96LT9 517 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ELP3Q9H9T3 547 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 PCDH8O95206 1070 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 FGFR1P11362 822 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 PDGFRAP16234 1089 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ACOT2P49753 483 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CHI3L2Q15782 390 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 GOLGA7BQ2TAP0 167 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 PEG10Q86TG7 708 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ATL2Q8NHH9 583 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SLITRK1Q96PX8 696 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CPVLQ9H3G5 476 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 LNPEPQ9UIQ6 1025 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CENPXA8MT69 81 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 GRAPQ13588 217 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 HLA-DQA1Q5Y7H0 255 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CDK20Q8IZL9 346 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ZSCAN18Q8TBC5 510 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 GRAPLQ8TC17 118 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SLC38A7Q9NVC3 462 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 AMACRQ9UHK6 382 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 HERC5Q9UII4 1024 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 STIP1P31948 543 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 NOL9Q5SY16 702 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 LRRC74BQ6ZQY2 392 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 EFL1Q7Z2Z2 1120 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ASXL2Q76L83 1435 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF335Q9H4Z2 1342 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CHN1P15882 459 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SARSP49591 514 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 CCR4P51679 360 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 NDUFAF6Q330K2 333 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SV2CQ496J9 727 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 C3orf62Q6ZUJ4 267 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 R3HCC1LQ7Z5L2 792 aaKnown RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 TAF8Q7Z7C8 310 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SSH3Q8TE77 659 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 UBASH3BQ8TF42 649 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 UCMAQ8WVF2 138 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 TMEM143Q96AN5 459 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF333Q96JL9 665 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 PACSIN1Q9BY11 444 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF624Q9P2J8 865 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-201ENST00000263708 MBD2Q9UBB5 411 aa11.81□□□□□ -0.52
PTPN4-201ENST00000263708 SERPINB9P50453 376 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 FAM83EQ2M2I3 478 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PITPNM2Q9BZ72 1349 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 VPS26AO75436 327 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 UMPSP11172 480 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 EFNA5P52803 228 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 STARD3Q14849 445 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PRR12Q9ULL5 1215 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 SMG5Q9UPR3 1016 aaKnown RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 NEU2Q9Y3R4 380 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PSMD14O00487 310 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PMPCBO75439 489 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 CYP21A2P08686 494 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 SLC1A1P43005 524 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 RHAGQ02094 409 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF177Q13360 481 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TRIM63Q969Q1 353 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TUBGCP4Q9UGJ1 667 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 FBXL21Q9UKT6 434 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 CYP27B1O15528 508 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 ZW10O43264 779 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms