RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 GARTP22102 1010 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 OAZ1P54368 228 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 RAD23BP54727 409 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 BPIFB4P59827 614 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 GHRHRQ02643 423 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 NCOA4Q13772 614 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 BBS9Q3SYG4 887 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CDCA2Q69YH5 1023 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 SNRNP48Q6IEG0 339 aaKnown RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 DNAJC24Q6P3W2 148 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 DLK2Q6UY11 383 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CATSPERGQ6ZRH7 1159 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 RFX8Q6ZV50 586 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ALLCQ8N6M5 410 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 FAM13CQ8NE31 585 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 RFWD2Q8NHY2 731 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TMEM174Q8WUU8 243 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 PARVAQ9NVD7 372 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 SLC5A4Q9NY91 659 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ARHGAP28Q9P2N2 729 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ADAMTS5Q9UNA0 930 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 AGTPBP1Q9UPW5 1226 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CLEC11AQ9Y240 323 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 SPDYE5A6NIY4 337 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 DGAT1O75907 488 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 MAP3K6O95382 1288 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 PDHA1P08559 390 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 GLRA2P23416 452 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 YY1P25490 414 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CETN2P41208 172 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 SP2Q02086 613 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 MOGSQ13724 837 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 EMC2Q15006 297 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 PSMD6Q15008 389 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TAF5Q15542 800 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 SEPT7Q16181 437 aaKnown RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 SLC5A9Q2M3M2 681 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 GPAT2Q6NUI2 795 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 RFWD3Q6PCD5 774 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 DPH6Q7L8W6 267 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 BBOF1Q8ND07 529 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 DEPTORQ8TB45 409 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CCHCR1Q8TD31 782 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ZNF75CPQ92670 426 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 ATP6V0A1Q93050 837 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 SLC7A6OSQ96CW6 309 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 MTMR12Q9C0I1 747 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 JPH1Q9HDC5 661 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 USH1CQ9Y6N9 552 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CLUHO75153 1309 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 OTOFQ9HC10 1997 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TMEM191CA6NGB0 347 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 EDF1O60869 148 aaKnown RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 TJP3O95049 919 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TMEM191BP0C7N4 346 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 KCNA2P16389 499 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CTCFP49711 727 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 RAB27AP51159 221 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 MYL6P60660 151 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TTLL12Q14166 644 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 LDLRAD1Q5T700 205 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 C3orf62Q6ZUJ4 267 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 VSIG10LQ86VR7 867 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 LRRC6Q86X45 466 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ZNF677Q86XU0 584 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ACTL9Q8TC94 416 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 PYROXD1Q8WU10 500 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TFAP2BQ92481 460 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 PTPRN2Q92932 1015 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TIPINQ9BVW5 301 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 TXLNGQ9NUQ3 528 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 HOXC10Q9NYD6 342 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 DOCK5Q9H7D0 1870 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 VWA5AO00534 786 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 PYGLP06737 847 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 FAM163BP0C2L3 166 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 NEFHP12036 1026 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 ABL2P42684 1182 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 FKBP1BP68106 108 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 OTUD4Q01804 1114 aaKnown RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 MTA1Q13330 715 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 PPIL2Q13356 520 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 RNASEH2BQ5TBB1 312 aaKnown RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 NLRP9Q7RTR0 991 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 RCOR2Q8IZ40 523 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 TCP10LQ8TDR4 215 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 C10orf82Q8WW14 230 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 NUDCD1Q96RS6 583 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 SLC9A2Q9UBY0 812 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 IP6K2Q9UHH9 426 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 KCNH4Q9UQ05 1017 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 STARD13Q9Y3M8 1113 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 SCINQ9Y6U3 715 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 hCG_1818297A0A087WSY0 165 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 CFAP69A5D8W1 941 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 ATP2A1O14983 1001 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 CST8O60676 142 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 PEX11AO75192 247 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 PSAPP07602 524 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms