RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 LCA5LO95447 670 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MYL4P12829 197 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NR1D1P20393 614 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 STAT3P40763 770 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MAPK9P45984 424 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MAP2K5Q13163 448 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TMED2Q15363 201 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ARMCX4Q5H9R4 360 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CDKL4Q5MAI5 379 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 HIBCHQ6NVY1 386 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ANGPTL8Q6UXH0 198 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 KDELC2Q7Z4H8 507 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PEG10Q86TG7 708 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 HEATR4Q86WZ0 1026 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GATAD2AQ86YP4 633 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL50Q8N5N7 158 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FBXO22Q8NEZ5 403 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GATAD2BQ8WXI9 593 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF496Q96IT1 587 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 HIC2Q96JB3 615 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PPP1R36Q96LQ0 422 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SMYD2Q9NRG4 433 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 KLC4Q9NSK0 619 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PCMTD2Q9NV79 361 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PPARGC1AQ9UBK2 798 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MAP3K5Q99683 1374 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC162PA2VCL2 907 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SAC3D1A6NKF1 404 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AXIN1O15169 862 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 KMOO15229 486 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 UFL1O94874 794 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 POLR2MP0CAP2 368 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IL10P22301 178 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ID4P47928 161 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CTCFP49711 727 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BLKP51451 505 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PURAQ00577 322 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MTX1Q13505 466 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TOB2Q14106 344 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EIF2S3LQ2VIR3 472 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF697Q5TEC3 545 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EPM2AIP1Q7L775 607 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BRAPQ7Z569 592 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF527Q8NB42 609 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BEST2Q8NFU1 509 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BAP1Q92560 729 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PSMB7Q99436 277 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZWILCHQ9H900 591 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NECTIN3Q9NQS3 549 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RRN3Q9NYV6 651 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SPATA2Q9UM82 520 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC4A4Q9Y6R1 1079 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DENND4BO75064 1496 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PCP4L1A6NKN8 68 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 STRNO43815 780 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ITGAVP06756 1048 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CNPP09543 421 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PRLRP16471 622 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DUSP3P51452 185 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TAB1Q15750 504 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RAB30Q15771 203 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BBS9Q3SYG4 887 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ESCO2Q56NI9 601 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TWF2Q6IBS0 349 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FAM43BQ6ZT52 329 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CHST3Q7LGC8 479 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MB21D1Q8N884 522 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CABLES1Q8TDN4 633 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 POP5Q969H6 163 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ULK4Q96C45 1275 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC3Q9BQI4 270 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EML4Q9HC35 981 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GGA3Q9NZ52 723 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IL1RAPL1Q9NZN1 696 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 LRCH1Q9Y2L9 728 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TDRKHQ9Y2W6 561 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MAP2P11137 1827 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AKAP11Q9UKA4 1901 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 USP19O94966 1318 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MANSC4A6NHS7 340 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DNALI1O14645 258 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MEFVO15553 781 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TMCC2O75069 709 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RPS12P25398 132 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IL12RB1P42701 662 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IFNAR2P48551 515 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GSSP48637 474 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SERPINB8P50452 374 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EFNA5P52803 228 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PPATQ06203 517 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CYP24A1Q07973 514 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 KCTD16Q68DU8 428 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GTF2IRD2BQ6EKJ0 949 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ERAP2Q6P179 960 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PXKQ7Z7A4 578 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GTF2IRD2Q86UP8 949 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 COLGALT2Q8IYK4 626 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PIGBQ92521 554 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 VMP1Q96GC9 406 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF512Q96ME7 567 aaPredicted RBP2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms