RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MMP8P22894 467 aa21.33■■□□□ 1
CLN3-250ENST00000636839 DNA2P51530 1060 aa21.33■■□□□ 1
CLN3-250ENST00000636839 IKBKEQ14164 716 aa21.33■■□□□ 1
CLN3-250ENST00000636839 TTC30AQ86WT1 665 aa21.33■■□□□ 1
CLN3-250ENST00000636839 CRYBG2Q8N1P7 616 aa21.33■■□□□ 1
CLN3-250ENST00000636839 ALS2CR12Q96Q35 445 aa21.33■■□□□ 1
CLN3-250ENST00000636839 LHX5Q9H2C1 402 aa21.33■■□□□ 1
CLN3-250ENST00000636839 GTF3C4Q9UKN8 822 aa21.33■■□□□ 1
CLN3-250ENST00000636839 TBKBP1A7MCY6 615 aa21.32■■□□□ 1
CLN3-250ENST00000636839 LSM8O95777 96 aaKnown RBP21.32■■□□□ 1
CLN3-250ENST00000636839 CDH5P33151 784 aaPredicted RBP21.32■■□□□ 1
CLN3-250ENST00000636839 GPD2P43304 727 aa21.32■■□□□ 1
CLN3-250ENST00000636839 PTPN20Q4JDL3 420 aa21.32■■□□□ 1
CLN3-250ENST00000636839 CNKSR3Q6P9H4 555 aa21.32■■□□□ 1
CLN3-250ENST00000636839 DCLRE1AQ6PJP8 1040 aa21.32■■□□□ 1
CLN3-250ENST00000636839 LCLAT1Q6UWP7 414 aa21.32■■□□□ 1
CLN3-250ENST00000636839 LRRN4CLQ8ND94 238 aa21.32■■□□□ 1
CLN3-250ENST00000636839 CPXM1Q96SM3 734 aa21.32■■□□□ 1
CLN3-250ENST00000636839 FAM124BQ9H5Z6 455 aaPredicted RBP21.32■■□□□ 1
CLN3-250ENST00000636839 DDX43Q9NXZ2 648 aaKnown RBP21.32■■□□□ 1
CLN3-250ENST00000636839 ADORA2BP29275 332 aa21.31■■□□□ 1
CLN3-250ENST00000636839 TKTP29401 623 aaKnown RBP21.31■■□□□ 1
CLN3-250ENST00000636839 AMPD2Q01433 879 aa21.31■■□□□ 1
CLN3-250ENST00000636839 FAM117BQ6P1L5 589 aa21.31■■□□□ 1
CLN3-250ENST00000636839 RSPH1Q8WYR4 309 aa21.31■■□□□ 1
CLN3-250ENST00000636839 FAM193BQ96PV7 902 aaPredicted RBP21.31■■□□□ 1
CLN3-250ENST00000636839 RTP3Q9BQQ7 232 aa21.31■■□□□ 1
CLN3-250ENST00000636839 TLR10Q9BXR5 811 aa21.31■■□□□ 1
CLN3-250ENST00000636839 KANSL3Q9P2N6 904 aa21.31■■□□□ 1
CLN3-250ENST00000636839 TMEM110-MUSTN1A8MSY1 372 aa21.31■■□□□ 1
CLN3-250ENST00000636839 CLDN5O00501 218 aa21.31■■□□□ 1
CLN3-250ENST00000636839 BCAR1P56945 870 aa21.31■■□□□ 1
CLN3-250ENST00000636839 DAAM2Q86T65 1068 aa21.31■■□□□ 1
CLN3-250ENST00000636839 NPAS4Q8IUM7 802 aa21.31■■□□□ 1
CLN3-250ENST00000636839 UROC1Q96N76 676 aa21.31■■□□□ 1
CLN3-250ENST00000636839 CRTAC1Q9NQ79 661 aa21.31■■□□□ 1
CLN3-250ENST00000636839 KIAA1257Q9ULG3 409 aa21.31■■□□□ 1
CLN3-250ENST00000636839 JRKLQ9Y4A0 524 aa21.31■■□□□ 1
CLN3-250ENST00000636839 NT5C1B-RDH14C9J2C7 533 aa21.3■■□□□ 1
CLN3-250ENST00000636839 ZNF185O15231 689 aa21.3■■□□□ 1
CLN3-250ENST00000636839 CXCR5P32302 372 aa21.3■■□□□ 1
CLN3-250ENST00000636839 DEFB103AP81534 67 aa21.3■■□□□ 1
CLN3-250ENST00000636839 MFSD5Q6N075 450 aa21.3■■□□□ 1
CLN3-250ENST00000636839 ERICH1Q86X53 443 aa21.3■■□□□ 1
CLN3-250ENST00000636839 RHOT2Q8IXI1 618 aa21.3■■□□□ 1
CLN3-250ENST00000636839 B3GALNT2Q8NCR0 500 aa21.3■■□□□ 1
CLN3-250ENST00000636839 ZNF564Q8TBZ8 553 aaPredicted RBP21.3■■□□□ 1
CLN3-250ENST00000636839 SLC2A14Q8TDB8 520 aa21.3■■□□□ 1
CLN3-250ENST00000636839 ERBB2P04626 1255 aa21.29■■□□□ 1
CLN3-250ENST00000636839 PTPN1P18031 435 aaKnown RBP21.29■■□□□ 1
CLN3-250ENST00000636839 RGS7P49802 495 aa21.29■■□□□ 1
CLN3-250ENST00000636839 C1QBPQ07021 282 aaKnown RBP21.29■■□□□ 1
CLN3-250ENST00000636839 MAMLD1Q13495 774 aa21.29■■□□□ 1
CLN3-250ENST00000636839 PKDCCQ504Y2 493 aa21.29■■□□□ 1
CLN3-250ENST00000636839 ZNF518BQ9C0D4 1074 aa21.29■■□□□ 1
CLN3-250ENST00000636839 L2HGDHQ9H9P8 463 aa21.29■■□□□ 1
CLN3-250ENST00000636839 CEP83Q9Y592 693 aa21.29■■□□□ 1
CLN3-250ENST00000636839 MICAL3Q7RTP6 2002 aa21.29■■□□□ 1
CLN3-250ENST00000636839 MYBPHLA2RUH7 354 aa21.29■■□□□ 1
CLN3-250ENST00000636839 M0QZQ0 153 aa21.29■■□□□ 1
CLN3-250ENST00000636839 NRP1O14786 923 aa21.29■■□□□ 1
CLN3-250ENST00000636839 RABGGTBP53611 331 aa21.29■■□□□ 1
CLN3-250ENST00000636839 MESDQ14696 234 aa21.29■■□□□ 1
CLN3-250ENST00000636839 PAPD7Q5XG87 772 aaKnown RBP21.29■■□□□ 1
CLN3-250ENST00000636839 C16orf59Q7L2K0 433 aa21.29■■□□□ 1
CLN3-250ENST00000636839 SLFN11Q7Z7L1 901 aa21.29■■□□□ 1
CLN3-250ENST00000636839 TMEM173Q86WV6 379 aaPredicted RBP21.29■■□□□ 1
CLN3-250ENST00000636839 TMEM209Q96SK2 561 aa21.29■■□□□ 1
CLN3-250ENST00000636839 GABBR2O75899 941 aa21.28■■□□□ 1
CLN3-250ENST00000636839 RFC2P35250 354 aa21.28■■□□□ 1
CLN3-250ENST00000636839 SLC11A1P49279 550 aa21.28■■□□□ 1
CLN3-250ENST00000636839 PDCLQ13371 301 aa21.28■■□□□ 1
CLN3-250ENST00000636839 TCEAL1Q15170 157 aa21.28■■□□□ 1
CLN3-250ENST00000636839 MDH1BQ5I0G3 518 aa21.28■■□□□ 1
CLN3-250ENST00000636839 MEI1Q5TIA1 1274 aa21.28■■□□□ 1
CLN3-250ENST00000636839 SMYD5Q6GMV2 418 aa21.28■■□□□ 1
CLN3-250ENST00000636839 PMF1Q6P1K2 205 aa21.28■■□□□ 1
CLN3-250ENST00000636839 PAQR9Q6ZVX9 377 aa21.28■■□□□ 1
CLN3-250ENST00000636839 OTOP2Q7RTS6 562 aa21.28■■□□□ 1
CLN3-250ENST00000636839 FUKQ8N0W3 1084 aa21.28■■□□□ 1
CLN3-250ENST00000636839 SUSD3Q96L08 255 aa21.28■■□□□ 1
CLN3-250ENST00000636839 B3GALT6Q96L58 329 aa21.28■■□□□ 1
CLN3-250ENST00000636839 ST7Q9NRC1 585 aa21.28■■□□□ 1
CLN3-250ENST00000636839 MRFAP1Q9Y605 127 aa21.28■■□□□ 1
CLN3-250ENST00000636839 ODC1P11926 461 aa21.28■■□□□ 1
CLN3-250ENST00000636839 RPL7AP62424 266 aaKnown RBP21.28■■□□□ 1
CLN3-250ENST00000636839 PDE4CQ08493 712 aa21.28■■□□□ 1
CLN3-250ENST00000636839 DAB2IPQ5VWQ8 1189 aa21.28■■□□□ 1
CLN3-250ENST00000636839 ARHGAP17Q68EM7 881 aa21.28■■□□□ 1
CLN3-250ENST00000636839 NT5DC3Q86UY8 548 aa21.28■■□□□ 1
CLN3-250ENST00000636839 TMEM86AQ8N2M4 240 aa21.28■■□□□ 1
CLN3-250ENST00000636839 COG1Q8WTW3 980 aa21.28■■□□□ 1
CLN3-250ENST00000636839 VCPIP1Q96JH7 1222 aa21.28■■□□□ 1
CLN3-250ENST00000636839 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.28■■□□□ 1
CLN3-250ENST00000636839 TCRBV5S1A1TA0A578 114 aa21.27■■□□□ 1
CLN3-250ENST00000636839 LHX1P48742 406 aa21.27■■□□□ 1
CLN3-250ENST00000636839 IFI16Q16666 785 aaKnown RBP21.27■■□□□ 1
CLN3-250ENST00000636839 PLEKHA7Q6IQ23 1121 aa21.27■■□□□ 1
CLN3-250ENST00000636839 OR10T2Q8NGX3 314 aa21.27■■□□□ 1
CLN3-250ENST00000636839 TNIP3Q96KP6 325 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms