RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 THAP12O43422 761 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 MED7O43513 233 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 HCRTO43612 131 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 MMEP08473 750 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 LINC00271P0C7V0 271 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 FAM228BP0C875 321 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 GZMAP12544 262 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 CD19P15391 556 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 PTPN1P18031 435 aaKnown RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 PCSK1P29120 753 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TKTP29401 623 aaKnown RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 BMPR1AP36894 532 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 KIF11P52732 1056 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 FMO1Q01740 532 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 PLCB3Q01970 1234 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 KRT17Q04695 432 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 YWHAHQ04917 246 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 ORC1Q13415 861 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 MTF1Q14872 753 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 STILQ15468 1287 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 SLC18A3Q16572 532 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 USP41Q3LFD5 358 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 SGO2Q562F6 1265 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 KIAA0319Q5VV43 1072 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TAF3Q5VWG9 929 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 ARHGAP17Q68EM7 881 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 FAM171BQ6P995 826 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 LCLAT1Q6UWP7 414 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TRIM72Q6ZMU5 477 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TAS1R1Q7RTX1 841 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 DDX53Q86TM3 631 aaKnown RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 GLYCTKQ8IVS8 523 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 RNF168Q8IYW5 571 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 C12orf29Q8N999 325 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 OLIG1Q8TAK6 271 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 LNX1Q8TBB1 728 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 CYFIP2Q96F07 1278 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TMEM169Q96HH4 297 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 RTP3Q9BQQ7 232 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TTPALQ9BTX7 342 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 LHX5Q9H2C1 402 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 DPEP3Q9H4B8 488 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 CHST7Q9NS84 486 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 CDH9Q9ULB4 789 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 PCDHGC3Q9UN70 934 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 TANC1Q9C0D5 1861 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 MYBPHLA2RUH7 354 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 LCHNA4D1U4 455 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 OR6C75A6NL08 312 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 H7C4K7 107 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 O00370 1275 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ZNF263O14978 683 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 TBC1D4O60343 1298 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ATP2C2O75185 946 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 CYP1A1P04798 512 aaPredicted RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 CFHP08603 1231 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ACAT1P24752 427 aaKnown RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 BRD2P25440 801 aaKnown RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PPM1AP35813 382 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 MAGEA1P43355 309 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 RABGGTBP53611 331 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 KRT83P78385 493 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 GFPT1Q06210 699 aaPredicted RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 SPA17Q15506 151 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 INTS6LQ5JSJ4 861 aaKnown RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 CCDC122Q5T0U0 273 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 C10orf76Q5T2E6 689 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PPP1R26Q5T8A7 1209 aaPredicted RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 FAM109BQ6ICB4 259 aaPredicted RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ACAD10Q6JQN1 1059 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ALKBH5Q6P6C2 394 aaKnown RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 TOGARAM2Q6ZUX3 1019 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ANKS3Q6ZW76 656 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 LRRTM3Q86VH5 581 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 CEP57Q86XR8 500 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 GPR65Q8IYL9 337 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 WDTC1Q8N5D0 677 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 B3GALNT2Q8NCR0 500 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 TMEM35BQ8NCS4 154 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 MYCBPAPQ8TBZ2 947 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 HNRNPABQ99729 332 aaKnown RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 LPIN3Q9BQK8 851 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 SYT15Q9BQS2 421 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PLVAPQ9BX97 442 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 VN1R3Q9BXE9 311 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 OXCT2Q9BYC2 517 aaPredicted RBP8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ZNF518BQ9C0D4 1074 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ISCUQ9H1K1 167 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PDCL3Q9H2J4 239 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 CRTAC1Q9NQ79 661 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 SPTLC3Q9NUV7 552 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 STK39Q9UEW8 545 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 NAGPAQ9UK23 515 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PYCARDQ9ULZ3 195 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 NENFQ9UMX5 172 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 ZKSCAN5Q9Y2L8 839 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 RWDD3Q9Y3V2 267 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PCDHA13Q9Y5I0 950 aa8.52□□□□□ -1.05
CPNE3-209ENST00000620393 PCDHA11Q9Y5I1 949 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms