RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MORC4Q8TE76 937 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 SEPT10Q9P0V9 454 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 FEZ2Q9UHY8 353 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-213ENST00000620219 NOCTQ9UK39 431 aaKnown RBP16.59■□□□□ 0.25
CPSF1-213ENST00000620219 GNEQ9Y223 722 aaKnown RBP16.59■□□□□ 0.25
CPSF1-213ENST00000620219 TADA2AO75478 443 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 RALAP11233 206 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 NEFHP12036 1026 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 ATF2P15336 505 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 DHX9Q08211 1270 aaKnown RBP16.59■□□□□ 0.25
CPSF1-213ENST00000620219 CLUL1Q15846 466 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 TFAP2BQ92481 460 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 ASNSD1Q9NWL6 643 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 ATP11BQ9Y2G3 1177 aa16.59■□□□□ 0.25
CPSF1-213ENST00000620219 A0A0A6YYK5 440 aaPredicted RBP16.58■□□□□ 0.25
CPSF1-213ENST00000620219 ATP1A2P50993 1020 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 CEP85LQ5SZL2 805 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 MAP7D3Q8IWC1 876 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 LRRC45Q96CN5 670 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 LPIN3Q9BQK8 851 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 MRPL45Q9BRJ2 306 aaKnown RBP16.58■□□□□ 0.25
CPSF1-213ENST00000620219 TSPYL2Q9H2G4 693 aaPredicted RBP16.58■□□□□ 0.25
CPSF1-213ENST00000620219 HMGXB4Q9UGU5 601 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 DDX20Q9UHI6 824 aaKnown RBP16.58■□□□□ 0.25
CPSF1-213ENST00000620219 MYO9BQ13459 2157 aa16.58■□□□□ 0.25
CPSF1-213ENST00000620219 DOCK3Q8IZD9 2030 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 ZBBXA8MT70 800 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 PRLRP16471 622 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 AXLP30530 894 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 MTM1Q13496 603 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 ATP13A4Q4VNC1 1196 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 SYCP2LQ5T4T6 812 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 WSCD1Q658N2 575 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 MMGT1Q8N4V1 131 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 TTC39CQ8N584 583 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 DHX35Q9H5Z1 703 aaKnown RBP16.58■□□□□ 0.24
CPSF1-213ENST00000620219 C2CD2Q9Y426 696 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 STYXL1Q9Y6J8 313 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 F8VP50 259 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 RNF40O75150 1001 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 PYGMP11217 842 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 NOMO3P69849 1222 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 SF3A3Q12874 501 aaKnown RBP eCLIP16.58■□□□□ 0.244e-7■■■■■ 48.3
CPSF1-213ENST00000620219 PPP2R5EQ16537 467 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 THEM5Q8N1Q8 247 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 SLC2A14Q8TDB8 520 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 RSAD1Q9HA92 442 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 CYP3A43Q9HB55 503 aa16.58■□□□□ 0.24
CPSF1-213ENST00000620219 GOLGA6CA6NDK9 693 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 F5H423 210 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-213ENST00000620219 OPA1O60313 960 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 GOLGA6DP0CG33 693 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 TSPY1Q01534 308 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 LEKR1Q6ZMV7 388 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 GOLGA6AQ9NYA3 693 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 GJD2Q9UKL4 321 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 APLP1P51693 650 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 KRT71Q3SY84 523 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 MDH1BQ5I0G3 518 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 HP1BP3Q5SSJ5 553 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-213ENST00000620219 ZC3H18Q86VM9 953 aaKnown RBP16.57■□□□□ 0.24
CPSF1-213ENST00000620219 ISCUQ9H1K1 167 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 CARD9Q9H257 536 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 FAM204AQ9H8W3 233 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 DDX43Q9NXZ2 648 aaKnown RBP16.57■□□□□ 0.24
CPSF1-213ENST00000620219 NR2E1Q9Y466 385 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 E7EVH7 732 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 H3BQF6 201 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 VEGFBP49765 207 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 DPY19L2P1Q6NXN4 242 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 CCDC33Q8N5R6 958 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 OSBPL8Q9BZF1 889 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 GPATCH2LQ9NWQ4 482 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 GTF2IRD1Q9UHL9 959 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 KIF13BQ9NQT8 1826 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 E5RJQ4 531 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 ACO1P21399 889 aaKnown RBP16.57■□□□□ 0.24
CPSF1-213ENST00000620219 PNPLA4P41247 253 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 DCAF6Q58WW2 860 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 MARCH8Q5T0T0 291 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 CCNYQ8ND76 341 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 DYDC1Q8WWB3 177 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 CASKIN2Q8WXE0 1202 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 EMID1Q96A84 441 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-213ENST00000620219 FERMT1Q9BQL6 677 aa16.57■□□□□ 0.24
CPSF1-213ENST00000620219 CREB3O43889 395 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 FAM153BP0C7A2 387 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 ACLYP53396 1101 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 UAP1Q16222 522 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-213ENST00000620219 FAM153CQ494X1 144 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 LRRC57Q8N9N7 239 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 RBM41Q96IZ5 413 aaKnown RBP16.56■□□□□ 0.24
CPSF1-213ENST00000620219 FAM153AQ9UHL3 310 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 CPB1P15086 417 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 MAP3K7CLP57077 242 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 FAM228AQ86W67 206 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 SENP8Q96LD8 212 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 ELOVL4Q9GZR5 314 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 RAB21Q9UL25 225 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 RBM47A0AV96 593 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms