RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 BPIFB1Q8TDL5 484 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 CDK5RAP3Q96JB5 506 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 HHIPQ96QV1 700 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 PYM1Q9BRP8 204 aaKnown RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 MSTO1Q9BUK6 570 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 C8orf33Q9H7E9 229 aaPredicted RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 C17orf75Q9HAS0 396 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 PLEKHA5Q9HAU0 1116 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 TBX20Q9UMR3 447 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 MAGED2Q9UNF1 606 aaPredicted RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 INVSQ9Y283 1065 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 DENND4CQ5VZ89 1909 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 A0A0B4J269 797 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 PIRO00625 290 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 CYB561D2O14569 222 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 RNF40O75150 1001 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 FAM13AO94988 1023 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 TYMPP19971 482 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 CYP3A5P20815 502 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 ACAT1P24752 427 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 PRPHP41219 470 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 ATP2C1P98194 919 aaPredicted RBP9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 MYBPC2Q14324 1141 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 TMEM132DQ14C87 1099 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 KARSQ15046 597 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 ARHGAP29Q52LW3 1261 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 ARHGAP15Q53QZ3 475 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 HYIQ5T013 277 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 TXNDC8Q6A555 127 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 EFCAB13Q8IY85 973 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 USP13Q92995 863 aaPredicted RBP9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 FIZ1Q96SL8 496 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 HNRNPABQ99729 332 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 IER2Q9BTL4 223 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 PI4K2AQ9BTU6 479 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 GPR88Q9GZN0 384 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 ZCWPW1Q9H0M4 648 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 TASP1Q9H6P5 420 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 PLSCR2Q9NRY7 297 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 BLOC1S4Q9NUP1 217 aa9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 CPSF3Q9UKF6 684 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-220ENST00000599716 MYO16Q9Y6X6 1858 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 ITPR3Q14573 2671 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 ABCA7Q8IZY2 2146 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 ANO9A1A5B4 782 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 RPP40O75818 363 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 PAPSS2O95340 614 aaPredicted RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 CD2BP2O95400 341 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 KRT18P05783 430 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 CCDC192P0DO97 292 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 HMGA1P17096 107 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 PLCG1P19174 1290 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 MCM2P49736 904 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 KCNA1Q09470 495 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 TAF12Q16514 161 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 DDR2Q16832 855 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 ITPRIPL2Q3MIP1 535 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 DGKKQ5KSL6 1271 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 ITIH5Q86UX2 942 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 WDR5BQ86VZ2 330 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 CMTM8Q8IZV2 173 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 C12orf50Q8NA57 414 aaPredicted RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 EZH1Q92800 747 aaPredicted RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 E2F7Q96AV8 911 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 BBC3Q96PG8 261 aaPredicted RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 SLC22A12Q96S37 553 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 CYP2S1Q96SQ9 504 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 TIPINQ9BVW5 301 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 LARSQ9P2J5 1176 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 MAFFQ9ULX9 164 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 GPSM3Q9Y4H4 160 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 ASB3Q9Y575 518 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 STK24Q9Y6E0 443 aa9.34□□□□□ -0.91
SHKBP1-220ENST00000599716 LAD1O00515 517 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 SCAMP3O14828 347 aaKnown RBP9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 GIPC1O14908 333 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 TRAK2O60296 914 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 TADA3O75528 432 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 F11P03951 625 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 CYP11A1P05108 521 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 NEFLP07196 543 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 ADRB2P07550 413 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 HAPLN1P10915 354 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 SPINK2P20155 84 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 CYP2F1P24903 491 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 GALK1P51570 392 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 MLLT6P55198 1093 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 NLRP12P59046 1061 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 FOXC1Q12948 553 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 RUNX3Q13761 415 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 VEPH1Q14D04 833 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 TMEM196Q5HYL7 178 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 STPG1Q5TH74 334 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 ADALQ6DHV7 355 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 PSAPL1Q6NUJ1 521 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 CRELD2Q6UXH1 353 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 USP49Q70CQ1 688 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 DYMQ7RTS9 669 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 RPLP0P6Q8NHW5 317 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 GAB3Q8WWW8 586 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms