RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 TEAD2Q15562 447 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 EDRF1Q3B7T1 1238 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 WDR72Q3MJ13 1102 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 FAM78AQ5JUQ0 283 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 CEP135Q66GS9 1140 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 CWF19L1Q69YN2 538 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 INTS8Q75QN2 995 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 ZSCAN18Q8TBC5 510 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 SYT15Q9BQS2 421 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 SNX25Q9H3E2 840 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 UXTQ9UBK9 157 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 CA14Q9ULX7 337 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 CACNA1HO95180 2353 aa18.99■□□□□ 0.63
SHKBP1-204ENST00000594862 LRRIQ3A6PVS8 624 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 SOBPA7XYQ1 873 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 MOSPD3O75425 235 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 CSH1P0DML2 217 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 CSH2P0DML3 217 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 KRT13P13646 458 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 P4HA1P13674 534 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 FCARP24071 287 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 ACAT1P24752 427 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 DDX6P26196 483 aaKnown RBP eCLIP18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 GABRR2P28476 465 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 MAGEA11P43364 429 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 GPC5P78333 572 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 ZNF699Q32M78 642 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 OSTM1Q86WC4 334 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 ELOA2Q8IYF1 753 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 ENGASEQ8NFI3 743 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 KBTBD7Q8WVZ9 684 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 TAF4BQ92750 862 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 PKMYT1Q99640 499 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 RPP25Q9BUL9 199 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 GZF1Q9H116 711 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 ATXN3LQ9H3M9 355 aa18.98■□□□□ 0.63
SHKBP1-204ENST00000594862 KRBA1A5PL33 1030 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 STK25O00506 426 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 GALR2O43603 387 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 SOAT2O75908 522 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 CLSTN1O94985 981 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 NPR3P17342 541 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 PSMC3P17980 439 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 WEE1P30291 646 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 NCOA4Q13772 614 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 COBLL1Q53SF7 1204 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 ZNF667Q5HYK9 610 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 TANGO2Q6ICL3 276 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 FAM171BQ6P995 826 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 VSTM1Q6UX27 236 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 TMEM105Q8N8V8 129 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 ZNF516Q92618 1163 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 IRF7Q92985 503 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 SMARCE1Q969G3 411 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 LPIN3Q9BQK8 851 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 PI4K2AQ9BTU6 479 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 TRMT61BQ9BVS5 477 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 TBC1D17Q9HA65 648 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 TMLHEQ9NVH6 421 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 OBP2AQ9NY56 170 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 EHD2Q9NZN4 543 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 GTF3C4Q9UKN8 822 aa18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 NUP210Q8TEM1 1887 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-204ENST00000594862 KINO60870 393 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 CST3P01034 146 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 TRIM21P19474 475 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 PSMC2P35998 433 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 GNL1P36915 607 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 PPP1R2P41236 205 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 CASP4P49662 377 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 STARD6P59095 220 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 MYL6P60660 151 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 PNOCQ13519 176 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 MLF2Q15773 248 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 SGSM1Q2NKQ1 1148 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 ZACNQ401N2 412 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 ZNF658Q5TYW1 1059 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 TDRD10Q5VZ19 366 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 GAREM2Q75VX8 874 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 PRSS33Q8NF86 280 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 TRMT2BQ96GJ1 504 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 TSG101Q99816 390 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 MKNK1Q9BUB5 465 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 IMPG2Q9BZV3 1241 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 XYLT2Q9H1B5 865 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 TASP1Q9H6P5 420 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 BRD9Q9H8M2 597 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 ZNF334Q9HCZ1 680 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 TRPV5Q9NQA5 729 aa18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 MAGEC2Q9UBF1 373 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-204ENST00000594862 CFAP54Q96N23 3096 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 C4BPAP04003 597 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 GJA1P17302 382 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 VAMP7P51809 220 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 STIM1Q13586 685 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 ZCWPW2Q504Y3 356 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 GPR158Q5T848 1215 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 IER5LQ5T953 404 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 SCARA3Q6AZY7 606 aa18.95■□□□□ 0.62
SHKBP1-204ENST00000594862 MFSD6LQ8IWD5 586 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms