RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SPATA2LQ8IUW3 424 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-203ENST00000593582 ZNF516Q92618 1163 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 E2F7Q96AV8 911 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 PI4K2AQ9BTU6 479 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 GZF1Q9H116 711 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-203ENST00000593582 BRD9Q9H8M2 597 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 FRMD4BQ9Y2L6 1034 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 SIT1Q9Y3P8 196 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 MYO15AQ9UKN7 3530 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 H0Y858 1186 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 WARSP23381 471 aaKnown RBP16.35■□□□□ 0.21
TRIM28-203ENST00000593582 LMO2P25791 158 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 ATICP31939 592 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 VIPR2P41587 438 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 RPL10AP62906 217 aaKnown RBP16.35■□□□□ 0.21
TRIM28-203ENST00000593582 BIRC3Q13489 604 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 KCNB1Q14721 858 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 MAPRE1Q15691 268 aaKnown RBP16.35■□□□□ 0.21
TRIM28-203ENST00000593582 WDR72Q3MJ13 1102 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 C4orf50Q6ZRC1 276 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 CCDC105Q8IYK2 499 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 DTWD2Q8NBA8 298 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 PARD3BQ8TEW8 1205 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 DEPDC1BQ8WUY9 529 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 KBTBD7Q8WVZ9 684 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 ATOH1Q92858 354 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-203ENST00000593582 DNASE1L2Q92874 299 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 IRF7Q92985 503 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 SYAP1Q96A49 352 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-203ENST00000593582 FUBP3Q96I24 572 aaKnown RBP eCLIP16.35■□□□□ 0.21
TRIM28-203ENST00000593582 PKMYT1Q99640 499 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 SYT15Q9BQS2 421 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 SNX25Q9H3E2 840 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 CDH9Q9ULB4 789 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 MAPK8IP1Q9UQF2 711 aa16.35■□□□□ 0.21
TRIM28-203ENST00000593582 KANSL1LA0AUZ9 987 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 MYBPHLA2RUH7 354 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 LRRIQ3A6PVS8 624 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 HEPACAM2A8MVW5 462 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 HCRTO43612 131 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 TACC1O75410 805 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 CLSTN1O94985 981 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 STAU1O95793 577 aaKnown RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 CYP2F1P24903 491 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 HOXD11P31277 338 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 GNL1P36915 607 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 MYL6P60660 151 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 PSMC1P62191 440 aaKnown RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 CLDN10P78369 228 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 CFAP221Q4G0U5 840 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 STXBP5Q5T5C0 1151 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 GPR158Q5T848 1215 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 CEP135Q66GS9 1140 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 FAM171BQ6P995 826 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 VITQ6UXI7 678 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 ARID3BQ8IVW6 561 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 MFSD6LQ8IWD5 586 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 PJA1Q8NG27 643 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 DDX23Q9BUQ8 820 aaKnown RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 FOXQ1Q9C009 403 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 NXF1Q9UBU9 619 aaKnown RBP16.34■□□□□ 0.21
TRIM28-203ENST00000593582 ZMYM5Q9UJ78 669 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 TRAF3IP3Q9Y228 551 aa16.34■□□□□ 0.21
TRIM28-203ENST00000593582 DMDP11532 3685 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 DPYSL4O14531 572 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 ZNF263O14978 683 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 ATP2C2O75185 946 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 DCNP07585 359 aaKnown RBP16.33■□□□□ 0.2
TRIM28-203ENST00000593582 PDGFRBP09619 1106 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 FAM163BP0C2L3 166 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 CSH1P0DML2 217 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 CSH2P0DML3 217 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 GDI1P31150 447 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 DDR2Q16832 855 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 TDRD10Q5VZ19 366 aaKnown RBP16.33■□□□□ 0.2
TRIM28-203ENST00000593582 TPRG1Q6ZUI0 275 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 YAF2Q8IY57 180 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 FMR1NBQ8N0W7 255 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-203ENST00000593582 GUF1Q8N442 669 aaKnown RBP16.33■□□□□ 0.2
TRIM28-203ENST00000593582 PLEKHO2Q8TD55 490 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 MKNK1Q9BUB5 465 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 XYLT2Q9H1B5 865 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 TASP1Q9H6P5 420 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 IL21Q9HBE4 155 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 HEBP1Q9NRV9 189 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 RMND1Q9NWS8 449 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 MAGEC2Q9UBF1 373 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-203ENST00000593582 MAGED2Q9UNF1 606 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-203ENST00000593582 USP34Q70CQ2 3546 aa16.33■□□□□ 0.2
TRIM28-203ENST00000593582 IKBKBO14920 756 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 MAPK13O15264 365 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 C4BPAP04003 597 aaKnown RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 HMGA1P17096 107 aaKnown RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 NR2F2P24468 414 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 RPL13P26373 211 aaKnown RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 GPR15P49685 360 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 NLRP12P59046 1061 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 CYP4F8P98187 520 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 PNOCQ13519 176 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 NCOA4Q13772 614 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms