RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	WARS	P23381	471 aa	Known RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	DDX6	P26196	483 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	RPL13	P26373	211 aa	Known RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TRPC3	Q13507	836 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TEAD2	Q15562	447 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MLF2	Q15773	248 aa	Predicted RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TAF12	Q16514	161 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	FAM171B	Q6P995	826 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	C1orf228	Q6PIY5	440 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GAREM2	Q75VX8	874 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MFSD6L	Q8IWD5	586 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TTC9B	Q8N6N2	239 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	FAM200A	Q8TCP9	573 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PARD3B	Q8TEW8	1205 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TRMT2B	Q96GJ1	504 aa	Known RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MSANTD3	Q96H12	275 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PKMYT1	Q99640	499 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SLITRK6	Q9H5Y7	841 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	RMND1	Q9NWS8	449 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	UXT	Q9UBK9	157 aa	Predicted RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	CA14	Q9ULX7	337 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	FRMD4B	Q9Y2L6	1034 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MRPS17	Q9Y2R5	130 aa	Known RBP	13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SIT1	Q9Y3P8	196 aa		13.49	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708		A0A1W2PRU2	124 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	KANSL1L	A0AUZ9	987 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	STK25	O00506	426 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MAN2B1	O00754	1011 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	CST3	P01034	146 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	NR3C1	P04150	777 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GABRR2	P28476	465 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	VSTM1	Q6UX27	236 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	DTWD2	Q8NBA8	298 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PJA1	Q8NG27	643 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	KBTBD7	Q8WVZ9	684 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TAF4B	Q92750	862 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MYRFL	Q96LU7	910 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ZSWIM3	Q96MP5	696 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GSDMA	Q96QA5	445 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GZF1	Q9H116	711 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ATXN3L	Q9H3M9	355 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TASP1	Q9H6P5	420 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	BRD9	Q9H8M2	597 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	EHD2	Q9NZN4	543 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	HOOK1	Q9UJC3	728 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GTF3C4	Q9UKN8	822 aa		13.48	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	NCAM2	O15394	837 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PHACTR2	O75167	634 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	NOL4	O94818	638 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	P4HA1	P13674	534 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MCCD1	P59942	119 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TNNC1	P63316	161 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	FCHO2	Q0JRZ9	810 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SNW1	Q13573	536 aa	Known RBP	13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	WDR72	Q3MJ13	1102 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	COBLL1	Q53SF7	1204 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	POTEH	Q6S545	545 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ZNF852	Q6ZMS4	543 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	INTS8	Q75QN2	995 aa	Known RBP	13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	OSTM1	Q86WC4	334 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ZNF516	Q92618	1163 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	CHAMP1	Q96JM3	812 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SPATA17	Q96L03	361 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TIGD1	Q96MW7	591 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MMS19	Q96T76	1030 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SYT15	Q9BQS2	421 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PLA2G2F	Q9BZM2	168 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SNX25	Q9H3E2	840 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GOLPH3L	Q9H4A5	285 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	IL21	Q9HBE4	155 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ZNF334	Q9HCZ1	680 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	TMLHE	Q9NVH6	421 aa		13.47	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PROB1	E7EW31	1015 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ZNF263	O14978	683 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	CHAD	O15335	359 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PI15	O43692	258 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SOAT2	O75908	522 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PRR29	P0C7W0	189 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	HMGA1	P17096	107 aa	Known RBP	13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GNL1	P36915	607 aa	Predicted RBP	13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PLCB2	Q00722	1185 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	FAM160A1	Q05DH4	1040 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	SGSM1	Q2NKQ1	1148 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	EDRF1	Q3B7T1	1238 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	GPR158	Q5T848	1215 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	VIT	Q6UXI7	678 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MYCBPAP	Q8TBZ2	947 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	ATOH1	Q92858	354 aa	Predicted RBP	13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	LPIN3	Q9BQK8	851 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	PI4K2A	Q9BTU6	479 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	MKNK1	Q9BUB5	465 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	XYLT2	Q9H1B5	865 aa		13.46	□□□□□ -0.25
CDK5RAP3-222	ENST00000581708	KIF9	Q9HAQ2	790 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms