RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 LRMDAQ9H2I8 198 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 AVENQ9NQS1 362 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 E2F8A0AVK6 867 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 SPDYE5A6NIY4 337 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 PPP1R12AO14974 1030 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 ASNSP08243 561 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 MTMR2Q13614 643 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 HADHQ16836 314 aaKnown RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 ISLR2Q6UXK2 745 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 ARID3BQ8IVW6 561 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 C4orf19Q8IY42 314 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 JDP2Q8WYK2 163 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 CNKSR1Q969H4 720 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 SLITRK1Q96PX8 696 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 ZNF277Q9NRM2 450 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 SENP1Q9P0U3 644 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 MCF2LO15068 1137 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 DHX15O43143 795 aaKnown RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 GRIN3BO60391 1043 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 TMEM191BP0C7N4 346 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 ATP4AP20648 1035 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 MUTP22033 750 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 VCPP55072 806 aaKnown RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 WNT7BP56706 349 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 EIF3EP60228 445 aaKnown RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 PSMC1P62191 440 aaKnown RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 BMPR2Q13873 1038 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 CFAP157Q5JU67 520 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 ASRGL1Q7L266 308 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 ANKLE1Q8NAG6 615 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 FAF2Q96CS3 445 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 GJD4Q96KN9 370 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 THTPAQ9BU02 230 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 LGALS13Q9UHV8 139 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 TOM1L1O75674 476 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 NR3C2P08235 984 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 RBP3P10745 1247 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 YARSP54577 528 aaKnown RBP15.21■□□□□ 0.02
VPS35-210ENST00000568784 EPHB1P54762 984 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 PGM5Q15124 567 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 CLNKQ7Z7G1 428 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 KATNAL2Q8IYT4 538 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 MCPH1Q8NEM0 835 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 UCMAQ8WVF2 138 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 SLC7A3Q8WY07 619 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 PRR11Q96HE9 360 aaPredicted RBP15.21■□□□□ 0.02
VPS35-210ENST00000568784 PDCD2LQ9BRP1 358 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 MOV10L1Q9BXT6 1211 aaKnown RBP15.21■□□□□ 0.02
VPS35-210ENST00000568784 MTMR12Q9C0I1 747 aa15.21■□□□□ 0.02
VPS35-210ENST00000568784 MAST2Q6P0Q8 1798 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 GDF10P55107 478 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 BLMHQ13867 455 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 TFDP3Q5H9I0 405 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 MON1BQ7L1V2 547 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 ACAP3Q96P50 834 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 MECRQ9BV79 373 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 ZCWPW1Q9H0M4 648 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 APOBEC3GQ9HC16 384 aaKnown RBP15.2■□□□□ 0.02
VPS35-210ENST00000568784 FAM237BA0A1B0GVD1 139 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 KDM4FA0A1W2PPD8 638 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 MAP3K7O43318 606 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 AVILO75366 819 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 SMNDC1O75940 238 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS35-210ENST00000568784 RNF8O76064 485 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 KCNA3P22001 575 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 HIRAP54198 1017 aaPredicted RBP15.2■□□□□ 0.02
VPS35-210ENST00000568784 NCKAP1LP55160 1127 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 IRX1P78414 480 aaPredicted RBP15.2■□□□□ 0.02
VPS35-210ENST00000568784 TNFAIP8L3Q5GJ75 292 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 NSL1Q96IY1 281 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 DCLRE1BQ9H816 532 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 CYP4F11Q9HBI6 524 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 EXTL3O43909 919 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 ZNF862O60290 1169 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 KRT3P12035 628 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 FNBP1LQ5T0N5 605 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 RNF220Q5VTB9 566 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 ATG4CQ96DT6 458 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 TRIM4Q9C037 500 aa15.2■□□□□ 0.02
VPS35-210ENST00000568784 MAGED2Q9UNF1 606 aaPredicted RBP15.2■□□□□ 0.02
VPS35-210ENST00000568784 FAM155BO75949 473 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 PSAPP07602 524 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 ELK3P41970 407 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 SATB1Q01826 763 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 FAAP100Q0VG06 881 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 MORF4L2Q15014 288 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 WDR78Q5VTH9 848 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 SNRNP48Q6IEG0 339 aaKnown RBP15.19■□□□□ 0.02
VPS35-210ENST00000568784 SLC30A9Q6PML9 568 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 C12orf56Q8IXR9 622 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 CCDC110Q8TBZ0 833 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 SCG3Q8WXD2 468 aaKnown RBP15.19■□□□□ 0.02
VPS35-210ENST00000568784 STRA6Q9BX79 667 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 NMRK1Q9NWW6 199 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 IQANK1A0A1B0GTG1 560 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 CCDC160A6NGH7 325 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 TRIM49D1C9J1S8 452 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 AP1G2O75843 785 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 CCNB1P14635 433 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms