RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 ZNF394Q53GI3 561 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 E4F1Q66K89 784 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF280DQ6N043 979 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 KIAA1841Q6NSI8 718 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 PDXDC1Q6P996 788 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 TMEM270Q6UE05 265 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 RSPO2Q6UXX9 243 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ANKS3Q6ZW76 656 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 METTL3Q86U44 580 aaKnown RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 DRC7Q8IY82 874 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 CRYBG2Q8N1P7 616 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 THEM5Q8N1Q8 247 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 SLC4A11Q8NBS3 891 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 SPC24Q8NBT2 197 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 RBBP8NLQ8NC74 664 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF397Q8NF99 534 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 OR10T2Q8NGX3 314 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 POF1BQ8WVV4 589 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ARNTL2Q8WYA1 636 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 RIN2Q8WYP3 895 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 TMEM176AQ96HP8 235 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 PKMYT1Q99640 499 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ACBD6Q9BR61 282 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 NT5C1AQ9BXI3 368 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 DPEP3Q9H4B8 488 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 MTMR10Q9NXD2 777 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 IMPACTQ9P2X3 320 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 MTRRQ9UBK8 725 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 LUC7L2Q9Y383 392 aaKnown RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 PCDHB4Q9Y5E5 795 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 BACE2Q9Y5Z0 518 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ADGRG1Q9Y653 693 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 EPOPA6NHQ4 379 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 OR6C75A6NL08 312 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 AKR1B15C9JRZ8 316 aaPredicted RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 H7C4K7 107 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 C2CD2LO14523 706 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 FSCN2O14926 492 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 CYP26A1O43174 497 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 ATP2C2O75185 946 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 GFPT2O94808 682 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 PAEPP09466 180 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TPM1P09493 284 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 COL9A1P20849 921 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 HNRNPH3P31942 346 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 KRT9P35527 623 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 USP8P40818 1118 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 ADKP55263 362 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 PSMC1P62191 440 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 GOLGA8FQ08AF8 430 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 GOLGA8DPQ0D2H9 430 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 PTPN14Q15678 1187 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 PSMD5Q16401 504 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 CCDC142Q17RM4 750 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 INTS6LQ5JSJ4 861 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 SLC8B1Q6J4K2 584 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 MAMSTRQ6ZN01 415 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TMC7Q7Z402 723 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 IRF2BP2Q7Z5L9 587 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 ACOT1Q86TX2 421 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 CNGA4Q8IV77 575 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 FMNL3Q8IVF7 1028 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 MRPL43Q8N983 215 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 TC2NQ8N9U0 490 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 AUTS2Q8WXX7 1259 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 ANP32BQ92688 251 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 SYN2Q92777 582 aaPredicted RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 PDLIM2Q96JY6 352 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TNIP3Q96KP6 325 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TMEM209Q96SK2 561 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 DNAJC7Q99615 494 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TCF25Q9BQ70 676 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 LPIN3Q9BQK8 851 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 SYT15Q9BQS2 421 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 OXCT2Q9BYC2 517 aaPredicted RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 ZCWPW1Q9H0M4 648 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 NUCKS1Q9H1E3 243 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF576Q9H609 170 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 RXFP1Q9HBX9 757 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 ACP6Q9NPH0 428 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 SCUBE2Q9NQ36 999 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 CRTAC1Q9NQ79 661 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TLR9Q9NR96 1032 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 MRPL17Q9NRX2 175 aaKnown RBP9□□□□□ -0.97
SF3B3-212ENST00000568539 ABHD10Q9NUJ1 306 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 AIPL1Q9NZN9 384 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 CDH9Q9ULB4 789 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 SSX2IPQ9Y2D8 614 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 IRAK3Q9Y616 596 aa9□□□□□ -0.97
SF3B3-212ENST00000568539 TMEM265A0A087WTH1 108 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 MYBPHLA2RUH7 354 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 RFXAPO00287 272 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 ADAM12O43184 909 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 LPXNO60711 386 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CXCL14O95715 111 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CALCAP01258 141 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CNPP09543 421 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 OR4Q2P0C623 313 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CYP11B1P15538 503 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 FERP16591 822 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms