RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 MTF1Q14872 753 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 HAUS3Q68CZ6 603 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 RASSF3Q86WH2 238 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 SYT12Q8IV01 421 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 MDGA1Q8NFP4 955 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 CCDC26Q8TAB7 109 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 MRPS31Q92665 395 aaKnown RBP17.54■□□□□ 0.4
CLK3-223ENST00000568488 PLEKHA5Q9HAU0 1116 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 FSCN3Q9NQT6 498 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 LOC400499M0QZD8 3231 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 ATXN2Q99700 1313 aaKnown RBP17.53■□□□□ 0.4
CLK3-223ENST00000568488 SFI1A8K8P3 1242 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 TNFRSF10BO14763 440 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 CLDN3O15551 220 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 XPOTO43592 962 aaKnown RBP17.53■□□□□ 0.4
CLK3-223ENST00000568488 PFKFB2O60825 505 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 ALDH1A2O94788 518 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 F11P03951 625 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 FDPSP14324 419 aaKnown RBP17.53■□□□□ 0.4
CLK3-223ENST00000568488 MUTP22033 750 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 PTGER3P43115 390 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 NR1H3Q13133 447 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 ZBTB6Q15916 424 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 TMEM150AQ86TG1 271 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 USP33Q8TEY7 942 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 OSCP1Q8WVF1 389 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 ZCWPW1Q9H0M4 648 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 DDX19AQ9NUU7 478 aaKnown RBP17.53■□□□□ 0.4
CLK3-223ENST00000568488 ABI2Q9NYB9 513 aaPredicted RBP17.53■□□□□ 0.4
CLK3-223ENST00000568488 WNT6Q9Y6F9 365 aa17.53■□□□□ 0.4
CLK3-223ENST00000568488 CACNA1EQ15878 2313 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 TTC26A0AVF1 554 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 ANTXRLA6NF34 631 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 LACTBL1A8MY62 500 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 CLTAP09496 248 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 OR52Z1P0C646 297 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 LILRA4P59901 499 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 PPP2R3AQ06190 1150 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 ZNF174Q15697 407 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 ZNF423Q2M1K9 1284 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 SLC23A3Q6PIS1 610 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 RAB44Q7Z6P3 723 aaPredicted RBP17.52■□□□□ 0.4
CLK3-223ENST00000568488 MON1AQ86VX9 555 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 DAW1Q8N136 415 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 FRMD1Q8N878 549 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 ATP2A3Q93084 1043 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 SPACA7Q96KW9 195 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 DRC1Q96MC2 740 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 BBC3Q96PG8 261 aaPredicted RBP17.52■□□□□ 0.4
CLK3-223ENST00000568488 FNBP1Q96RU3 617 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 TM6SF1Q9BZW5 370 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 CCDC86Q9H6F5 360 aaKnown RBP17.52■□□□□ 0.4
CLK3-223ENST00000568488 TRPC7Q9HCX4 862 aa17.52■□□□□ 0.4
CLK3-223ENST00000568488 ZNF638Q14966 1978 aaKnown RBP17.51■□□□□ 0.39
CLK3-223ENST00000568488 UPK3BL1B0FP48 263 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 UPK3BL2E5RIL1 263 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 OPHN1O60890 802 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 HAPLN1P10915 354 aaPredicted RBP17.51■□□□□ 0.39
CLK3-223ENST00000568488 TRIM29Q14134 588 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 CRY1Q16526 586 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 LYSMD4Q5XG99 296 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 IGSF10Q6WRI0 2623 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 METTL23Q86XA0 190 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 THEM5Q8N1Q8 247 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 STKLD1Q8NE28 680 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 SPPL2BQ8TCT7 592 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 FAM212AQ96EL1 285 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 LRIG1Q96JA1 1093 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 CYP2S1Q96SQ9 504 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 BCCIPQ9P287 314 aaKnown RBP eCLIP17.51■□□□□ 0.39
CLK3-223ENST00000568488 MMP17Q9ULZ9 603 aa17.51■□□□□ 0.39
CLK3-223ENST00000568488 FLNBO75369 2602 aaKnown RBP17.51■□□□□ 0.39
CLK3-223ENST00000568488 E9PMD0 336 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 K7EQS6 105 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 HMGA1P17096 107 aaKnown RBP17.5■□□□□ 0.39
CLK3-223ENST00000568488 ITPKAP23677 461 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 P2RY2P41231 377 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 TNFSF9P41273 254 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 FAM160A1Q05DH4 1040 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 GFPT1Q06210 699 aaPredicted RBP17.5■□□□□ 0.39
CLK3-223ENST00000568488 MCL1Q07820 350 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 ZNF268Q14587 947 aaPredicted RBP17.5■□□□□ 0.39
CLK3-223ENST00000568488 EML3Q32P44 896 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 LMBRD2Q68DH5 695 aaPredicted RBP17.5■□□□□ 0.39
CLK3-223ENST00000568488 TMEM92Q6UXU6 159 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 LRRTM3Q86VH5 581 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 PGBD3Q8N328 593 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 DEFB119Q8N690 84 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 OLIG1Q8TAK6 271 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 C2orf15Q8WU43 125 aaKnown RBP17.5■□□□□ 0.39
CLK3-223ENST00000568488 HAPLN2Q9GZV7 340 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 LINC00597Q9H2U6 94 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 LRWD1Q9UFC0 647 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 SLC6A14Q9UN76 642 aa17.5■□□□□ 0.39
CLK3-223ENST00000568488 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.5■□□□□ 0.39
CLK3-223ENST00000568488 CKMP06732 381 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 GPR15P49685 360 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 ZNF77Q15935 545 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 SDHAF4Q5VUM1 108 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 ZPBP2Q6X784 338 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms