RNA–Protein interactions for RNA: ENST00000564047.1

SPG7-209, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, human

TSL 2

Gene SPG7, Length 422 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG7-209	ENST00000564047	ARHGAP6	O43182	974 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	OAZ2	O95190	189 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	VDR	P11473	427 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	BMP1	P13497	986 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	LMO2	P25791	158 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	PCSK1	P29120	753 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	TKT	P29401	623 aa	Known RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	EIF4A3	P38919	411 aa	Known RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	RABGGTB	P53611	331 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	CDR2	Q01850	454 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	OVOS1	Q6IE37	1185 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	VPS36	Q86VN1	386 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	DDX1	Q92499	740 aa	Known RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	CCDC42	Q96M95	316 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	HEXIM2	Q96MH2	286 aa	Known RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	AGPAT1	Q99943	283 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	RTP3	Q9BQQ7	232 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	ACBD6	Q9BR61	282 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	OXCT2	Q9BYC2	517 aa	Predicted RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	SLC28A3	Q9HAS3	691 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	ACP6	Q9NPH0	428 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	CDH9	Q9ULB4	789 aa		13.73	□□□□□ -0.21
SPG7-209	ENST00000564047	LINC01553	A4QN01	128 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	SOWAHD	A6NJG2	315 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	THAP12	O43422	761 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	MED7	O43513	233 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	SOD2	P04179	222 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	PLEK	P08567	350 aa	Predicted RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	PDGFRB	P09619	1106 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	TNFAIP3	P21580	790 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	CYLC1	P35663	651 aa	Predicted RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	BMPR1A	P36894	532 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	PLCB3	Q01970	1234 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	KRT17	Q04695	432 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	ORC1	Q13415	861 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	MRPL58	Q14197	206 aa	Known RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	BMS1	Q14692	1282 aa	Known RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	STIL	Q15468	1287 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	ASTE1	Q2TB18	679 aa	Predicted RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	USP41	Q3LFD5	358 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	SGO2	Q562F6	1265 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	TMEM31	Q5JXX7	168 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	VARS2	Q5ST30	1063 aa	Known RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	DDX53	Q86TM3	631 aa	Known RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	ACOT1	Q86TX2	421 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	CEP57	Q86XR8	500 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	ZNF606	Q8WXB4	792 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	SAMD11	Q96NU1	681 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	TTPAL	Q9BTX7	342 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	HERC2P3	Q9BVR0	1158 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	PLVAP	Q9BX97	442 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	VN1R3	Q9BXE9	311 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	DPEP3	Q9H4B8	488 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	DEF6	Q9H4E7	631 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	CHST7	Q9NS84	486 aa		13.72	□□□□□ -0.21
SPG7-209	ENST00000564047	PUF60	Q9UHX1	559 aa	Known RBP	13.72	□□□□□ -0.21
SPG7-209	ENST00000564047		H7C4K7	107 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	HCRT	O43612	131 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	FGF18	O76093	207 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	CD19	P15391	556 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	CHRNB2	P17787	502 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	PTPN1	P18031	435 aa	Known RBP	13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	ACAT1	P24752	427 aa	Known RBP	13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	BRD2	P25440	801 aa	Known RBP	13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	KIF11	P52732	1056 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	CNGA2	Q16280	664 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	ARHGAP17	Q68EM7	881 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	ZNF280D	Q6N043	979 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	RAD9B	Q6WBX8	426 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	ANKS3	Q6ZW76	656 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	TAS1R1	Q7RTX1	841 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	GPR65	Q8IYL9	337 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	MICALL1	Q8N3F8	863 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	B3GALNT2	Q8NCR0	500 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	SLC30A5	Q8TAD4	765 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	OLIG1	Q8TAK6	271 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	SLC20A1	Q8WUM9	679 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	TFAP2B	Q92481	460 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	SYT15	Q9BQS2	421 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	ZSWIM1	Q9BR11	485 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	PCDHGC3	Q9UN70	934 aa		13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.71	□□□□□ -0.21
SPG7-209	ENST00000564047	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.71	□□□□□ -0.22
SPG7-209	ENST00000564047	OR6C75	A6NL08	312 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	EIF3CL	B5ME19	914 aa	Known RBP	13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	C5orf67	F2Z3F1	127 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047		O00370	1275 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	DDX3X	O00571	662 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	AKR1B10	O60218	316 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	NDUFA10	O95299	355 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	CALCA	P01258	141 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	RB1	P06400	928 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	CA3	P07451	260 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	MME	P08473	750 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	MYOG	P15173	224 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	CTNNB1	P35222	781 aa		13.7	□□□□□ -0.22
SPG7-209	ENST00000564047	TSPY1	Q01534	308 aa		13.7	□□□□□ -0.22

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