RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 A6NJR5 290 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 SORBS2O94875 1100 aaKnown RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 HLA-DRAP01903 254 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 WEE2P0C1S8 567 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 ITGB5P18084 799 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 QARSP47897 775 aaKnown RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 HIRAP54198 1017 aaPredicted RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 AQP5P55064 265 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 OTUD4Q01804 1114 aaKnown RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 CHI3L2Q15782 390 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 MTERF2Q49AM1 385 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 SLC45A4Q5BKX6 768 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 TCHHL1Q5QJ38 904 aaPredicted RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 MROH9Q5TGP6 573 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 SCARA3Q6AZY7 606 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 IRGCQ6NXR0 463 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 SCYL2Q6P3W7 929 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 RIPOR1Q6ZS17 1223 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 PDIK1LQ8N165 341 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 GLIS2Q9BZE0 524 aaPredicted RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 HEY1Q9Y5J3 304 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 GAKO14976 1311 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 TRIM49D1C9J1S8 452 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 E5RJQ4 531 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 H7C0C1 242 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 ZWINTO95229 277 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 LMNAP02545 664 aaKnown RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 NPTX2P47972 431 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 ATP5OP48047 213 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 SCNN1BP51168 640 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 ACVR2BQ13705 512 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 KBTBD12Q3ZCT8 623 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 PPP6R3Q5H9R7 873 aaPredicted RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 FOXB2Q5VYV0 432 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 C1orf228Q6PIY5 440 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 LDHDQ86WU2 507 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 CDR2LQ86X02 465 aaPredicted RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 OGFOD1Q8N543 542 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.89□□□□□ -0.51
LDLR-208ENST00000558518 ATXN7L3BQ96GX2 97 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 OCEL1Q9H607 264 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 WDR35Q9P2L0 1181 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 SEPT9Q9UHD8 586 aaPredicted RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 MAGEA13PA6NCF6 341 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 IRF6O14896 467 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 LIASO43766 372 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 PFDN1O60925 122 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 P4HBP07237 508 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 KRT19P08727 400 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 RFX1P22670 979 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 MTMR1Q13613 665 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 POLNQ7Z5Q5 900 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 MFN1Q8IWA4 741 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 ATP11CQ8NB49 1132 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 RBM15BQ8NDT2 890 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 EZH1Q92800 747 aaPredicted RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 MMP19Q99542 508 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 EHMT1Q9H9B1 1298 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 TMEM8AQ9HCN3 771 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 LGALS13Q9UHV8 139 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 TBX20Q9UMR3 447 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 C2CD2LO14523 706 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 GRAP2O75791 330 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 ELK3P41970 407 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 GPX6P59796 221 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 MAMLD1Q13495 774 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 RABGAP1LQ5R372 815 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 SH3BP5LQ7L8J4 393 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 ARHGAP24Q8N264 748 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 GALNT15Q8N3T1 639 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 OXNAD1Q96HP4 312 aaPredicted RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 SENP7Q9BQF6 1050 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 UBE2OQ9C0C9 1292 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 RAVER2Q9HCJ3 691 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 MRPL47Q9HD33 250 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 SPECC1L-ADORA2AF8WAN1 911 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 F7P08709 466 aaPredicted RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 PSMA2P25787 234 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 GTF2H1P32780 548 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 RTP1P59025 263 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 CENPCQ03188 943 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 ASPHQ12797 758 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 PPP2R5DQ14738 602 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 TRIP10Q15642 601 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 DARS2Q6PI48 645 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 NPNTQ6UXI9 565 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 SCUBE1Q8IWY4 988 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 C12orf50Q8NA57 414 aaPredicted RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 SERAC1Q96JX3 654 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 GORASP1Q9BQQ3 440 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 RANBP17Q9H2T7 1088 aaKnown RBP11.88□□□□□ -0.51
LDLR-208ENST00000558518 PPM1HQ9ULR3 514 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 EXOC7Q9UPT5 735 aa11.88□□□□□ -0.51
LDLR-208ENST00000558518 CSDE1O75534 798 aaKnown RBP11.87□□□□□ -0.51
LDLR-208ENST00000558518 WFS1O76024 890 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 RNF8O76064 485 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 OR6B1O95007 311 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 CD48P09326 243 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 C16orf46Q6P387 395 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 MOXD1Q6UVY6 613 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms