RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 SMAD3P84022 425 aaKnown RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 CCZ1BP86790 482 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 CCZ1P86791 482 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 MRPL58Q14197 206 aaKnown RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 CNGA2Q16280 664 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 PSMD5Q16401 504 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 PDE12Q6L8Q7 609 aaKnown RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 ACOT1Q86TX2 421 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 MYCBPAPQ8TBZ2 947 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 ZNF606Q8WXB4 792 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 TRIM11Q96F44 468 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 FUBP3Q96I24 572 aaKnown RBP eCLIP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 TWNKQ96RR1 684 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 MRPL17Q9NRX2 175 aaKnown RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 CHST7Q9NS84 486 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 TIMM13Q9Y5L4 95 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 SOWAHDA6NJG2 315 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 EIF3CLB5ME19 914 aaKnown RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 O00370 1275 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 NDUFA10O95299 355 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 PDGFRBP09619 1106 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 CTSAP10619 480 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 CPB1P15086 417 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 BRD2P25440 801 aaKnown RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 DEKP35659 375 aaKnown RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 EIF4A3P38919 411 aaKnown RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 ERVK-21P61565 698 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 RTP2Q5QGT7 225 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 PPP2R2DQ66LE6 453 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 LCLAT1Q6UWP7 414 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 ZNF571Q7Z3V5 609 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 VPS52Q8N1B4 723 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 KLHL23Q8NBE8 558 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 TMEM35BQ8NCS4 154 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 RIN2Q8WYP3 895 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 DDX1Q92499 740 aaKnown RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 SMARCD1Q96GM5 515 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 EIF3CQ99613 913 aaKnown RBP15.39■□□□□ 0.05
SHMT2-210ENST00000553950 SYT11Q9BT88 431 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 ZCWPW1Q9H0M4 648 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 LMAN2LQ9H0V9 348 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 ZBP1Q9H171 429 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 LHX5Q9H2C1 402 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 ABCB6Q9NP58 842 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 FNIP2Q9P278 1114 aa15.39■□□□□ 0.05
SHMT2-210ENST00000553950 M0QYV0 167 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 MMEP08473 750 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 FAM200BP0CF97 657 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 GZMAP12544 262 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 ACAT1P24752 427 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 LMO2P25791 158 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 NSFP46459 744 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 NDUFV1P49821 464 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 PSMC1P62191 440 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 FMO1Q01740 532 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 BST2Q10589 180 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 ORC1Q13415 861 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 SMC1AQ14683 1233 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 GOLGA7BQ2TAP0 167 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 MDH1BQ5I0G3 518 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 TAF3Q5VWG9 929 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 SLC8B1Q6J4K2 584 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 SPATA2LQ8IUW3 424 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 GLYCTKQ8IVS8 523 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 FBXO22Q8NEZ5 403 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 OR10T2Q8NGX3 314 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 SPPL2BQ8TCT7 592 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 IPO4Q8TEX9 1081 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 SLC20A1Q8WUM9 679 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 CYFIP2Q96F07 1278 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 CHP1Q99653 195 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 HNRNPABQ99729 332 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 RTP3Q9BQQ7 232 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 MED10Q9BTT4 135 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 PBX4Q9BYU1 374 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 DPEP3Q9H4B8 488 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 SLC28A3Q9HAS3 691 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 NGRNQ9NPE2 291 aaKnown RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 TLR9Q9NR96 1032 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 FAM49BQ9NUQ9 324 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 TSPAN16Q9UKR8 245 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 MAFFQ9ULX9 164 aa15.38■□□□□ 0.05
SHMT2-210ENST00000553950 EPN1Q9Y6I3 576 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-210ENST00000553950 LCA5LO95447 670 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 CCDC175P0C221 793 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 IGFBP6P24592 240 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-210ENST00000553950 CDH5P33151 784 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-210ENST00000553950 CYP27A1Q02318 531 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 CENPCQ03188 943 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 TAP1Q03518 808 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 ASTE1Q2TB18 679 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-210ENST00000553950 CFAP221Q4G0U5 840 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 TPGS2Q68CL5 300 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 FAM109BQ6ICB4 259 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-210ENST00000553950 FAM171BQ6P995 826 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 CHRDL2Q6WN34 429 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 FAM35AQ86V20 835 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 ANKRD52Q8NB46 1076 aa15.37■□□□□ 0.05
SHMT2-210ENST00000553950 MYLPFQ96A32 169 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms