RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 POU5F1BQ06416 359 aa19■□□□□ 0.63
VIM-209ENST00000544301 ORC1Q13415 861 aa19■□□□□ 0.63
VIM-209ENST00000544301 OASLQ15646 514 aaKnown RBP19■□□□□ 0.63
VIM-209ENST00000544301 GJC2Q5T442 439 aaPredicted RBP19■□□□□ 0.63
VIM-209ENST00000544301 CCDC121Q6ZUS5 278 aa19■□□□□ 0.63
VIM-209ENST00000544301 ARMCX2Q7L311 632 aa19■□□□□ 0.63
VIM-209ENST00000544301 POLNQ7Z5Q5 900 aa19■□□□□ 0.63
VIM-209ENST00000544301 LRRC34Q8IZ02 419 aa19■□□□□ 0.63
VIM-209ENST00000544301 CXorf38Q8TB03 319 aa19■□□□□ 0.63
VIM-209ENST00000544301 FAXDC2Q96IV6 333 aa19■□□□□ 0.63
VIM-209ENST00000544301 C9orf72Q96LT7 481 aa19■□□□□ 0.63
VIM-209ENST00000544301 RBM15Q96T37 977 aaKnown RBP eCLIP19■□□□□ 0.632e-11■■□□□ 14.4
VIM-209ENST00000544301 SMYD3Q9H7B4 428 aa19■□□□□ 0.63
VIM-209ENST00000544301 EFCC1Q9HA90 598 aa19■□□□□ 0.63
VIM-209ENST00000544301 A0A087WZ62 844 aa19■□□□□ 0.63
VIM-209ENST00000544301 ITGBL1O95965 494 aaPredicted RBP19■□□□□ 0.63
VIM-209ENST00000544301 ITGB3P05106 788 aa19■□□□□ 0.63
VIM-209ENST00000544301 MCF2P10911 925 aa19■□□□□ 0.63
VIM-209ENST00000544301 ETS1P14921 441 aa19■□□□□ 0.63
VIM-209ENST00000544301 CREB1P16220 341 aa19■□□□□ 0.63
VIM-209ENST00000544301 MAGEA4P43358 317 aa19■□□□□ 0.63
VIM-209ENST00000544301 ARSEP51690 589 aa19■□□□□ 0.63
VIM-209ENST00000544301 VCPP55072 806 aaKnown RBP19■□□□□ 0.63
VIM-209ENST00000544301 PSMC1P62191 440 aaKnown RBP19■□□□□ 0.63
VIM-209ENST00000544301 SLC25A11Q02978 314 aaKnown RBP19■□□□□ 0.63
VIM-209ENST00000544301 ARFGAP1Q8N6T3 406 aa19■□□□□ 0.63
VIM-209ENST00000544301 SLC4A11Q8NBS3 891 aa19■□□□□ 0.63
VIM-209ENST00000544301 SHCBP1Q8NEM2 672 aa19■□□□□ 0.63
VIM-209ENST00000544301 NKD2Q969F2 451 aaPredicted RBP19■□□□□ 0.63
VIM-209ENST00000544301 HAUS1Q96CS2 278 aa19■□□□□ 0.63
VIM-209ENST00000544301 FDXACB1Q9BRP7 624 aaPredicted RBP19■□□□□ 0.63
VIM-209ENST00000544301 CAPN7Q9Y6W3 813 aa19■□□□□ 0.63
VIM-209ENST00000544301 LGALS2P05162 132 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 VSTM1Q6UX27 236 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 CEP128Q6ZU80 1094 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 LINC01465Q8N7H1 131 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 KAT2BQ92831 832 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 TWNKQ96RR1 684 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 CPXM1Q96SM3 734 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 PPP1R16BQ96T49 567 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 PDZD7Q9H5P4 517 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 HMGXB4Q9UGU5 601 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 LGALS13Q9UHV8 139 aa18.99■□□□□ 0.63
VIM-209ENST00000544301 FOXO6A8MYZ6 492 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 LRCH4O75427 683 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 CETPP11597 493 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 IFNAR2P48551 515 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 TNFAIP2Q03169 654 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 GPS1Q13098 491 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 LAMC2Q13753 1193 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 TAPT1Q6NXT6 567 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 PIGWQ7Z7B1 504 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 XYLT1Q86Y38 959 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 IFNLR1Q8IU57 520 aaPredicted RBP18.98■□□□□ 0.63
VIM-209ENST00000544301 CYP4X1Q8N118 509 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 CPB2Q96IY4 423 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 OSBPL7Q9BZF2 842 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 ELOVL4Q9GZR5 314 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 TMEM120BA0PK00 339 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 CILPO75339 1184 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 ERBB2P04626 1255 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 ITGAVP06756 1048 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 IL1R2P27930 398 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 GJA5P36382 358 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 GSCP56915 257 aaPredicted RBP18.98■□□□□ 0.63
VIM-209ENST00000544301 PTPN11Q06124 597 aaPredicted RBP18.98■□□□□ 0.63
VIM-209ENST00000544301 ACTN3Q08043 901 aaPredicted RBP18.98■□□□□ 0.63
VIM-209ENST00000544301 STAT4Q14765 748 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 KIAA0319LQ8IZA0 1049 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 FNIP1Q8TF40 1166 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 CCDC77Q9BR77 488 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 ZWILCHQ9H900 591 aa18.98■□□□□ 0.63
VIM-209ENST00000544301 TPX2Q9ULW0 747 aaKnown RBP18.98■□□□□ 0.63
VIM-209ENST00000544301 ZSWIM8A7E2V4 1837 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 MAGEB2O15479 319 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 ABHD2P08910 425 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 CYP2C8P10632 490 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 ATICP31939 592 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 SMTNL2Q2TAL5 461 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 MAMDC4Q6UXC1 1216 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 CCDC197Q8NCU1 140 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 SLC35B2Q8TB61 432 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 TMEM176AQ96HP8 235 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 ASB7Q9H672 318 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 SAYSD1Q9NPB0 183 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 WDR35Q9P2L0 1181 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 NAALADL1Q9UQQ1 740 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 AKT3Q9Y243 479 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 EFR3BQ9Y2G0 817 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 CDH16O75309 829 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 MICAL2O94851 1124 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 VIMP08670 466 aaKnown RBP18.97■□□□□ 0.63
VIM-209ENST00000544301 KRT7P08729 469 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 PECAM1P16284 738 aaPredicted RBP18.97■□□□□ 0.63
VIM-209ENST00000544301 ZNF268Q14587 947 aaPredicted RBP18.97■□□□□ 0.63
VIM-209ENST00000544301 LRRC14Q15048 493 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 SLC10A6Q3KNW5 377 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 CYP4F22Q6NT55 531 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 EMC1Q8N766 993 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 MGARPQ8TDB4 240 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms