RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CYTH2Q99418 400 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 LNPEPQ9UIQ6 1025 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 RABGEF1Q9UJ41 708 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 B2RBV5 119 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 TBX10O75333 385 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 NPTXRO95502 500 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 ENO1P06733 434 aaKnown RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 CACNA2D1P54289 1103 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 LBRQ14739 615 aaKnown RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 DACT2Q5SW24 774 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 AEBP2Q6ZN18 517 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 RINLQ6ZS11 566 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 FGD4Q96M96 766 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 TTC1Q99614 292 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 TIPINQ9BVW5 301 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 GLIS2Q9BZE0 524 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 PCDH9Q9HC56 1237 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 PPARGC1AQ9UBK2 798 aaKnown RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 GABBR1Q9UBS5 961 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 RPL26L1Q9UNX3 145 aaKnown RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 H3BRJ5 948 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ZC3H11AO75152 810 aaKnown RBP eCLIP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 KCNT1Q5JUK3 1230 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 FNBP1LQ5T0N5 605 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 FAM182AQ5T1J6 154 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 TDRD10Q5VZ19 366 aaKnown RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 PLEKHA7Q6IQ23 1121 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ZNF398Q8TD17 642 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 TAAR1Q96RJ0 339 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 IMPG2Q9BZV3 1241 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 PPCSQ9HAB8 311 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 RAVER2Q9HCJ3 691 aaKnown RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 TAS2R1Q9NYW7 299 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 KANSL3Q9P2N6 904 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 MTO1Q9Y2Z2 717 aaKnown RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 CLUHO75153 1309 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 FCHO1O14526 889 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ABLIM1O14639 778 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ENTPD3O75355 529 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 CIB2O75838 187 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ZCCHC18P0CG32 403 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 KITP10721 976 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 MRPS9P82933 396 aaKnown RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 CDK16Q00536 496 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 OTUD4Q01804 1114 aaKnown RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 KDSRQ06136 332 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 PTK7Q13308 1070 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 C11orf91Q3C1V1 193 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 MSS51Q4VC12 460 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 TFDP3Q5H9I0 405 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 PPIL6Q8IXY8 311 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ACTL9Q8TC94 416 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 DDX50Q9BQ39 737 aaKnown RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 SEPT9Q9UHD8 586 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 WASF2Q9Y6W5 498 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 I3L4J1 428 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 TM9SF1O15321 606 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 CST8O60676 142 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 SERPINB4P48594 390 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 WDR72Q3MJ13 1102 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 CYP4A22Q5TCH4 519 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 ANO5Q75V66 913 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 VPS11Q9H270 941 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 CYLDQ9NQC7 956 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 MARCOQ9UEW3 520 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-237ENST00000539504 FEM1BQ9UK73 627 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 WNK3Q9BYP7 1800 aa11.81□□□□□ -0.52
SYNE1-237ENST00000539504 IQANK1A0A1B0GTG1 560 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 CCDC195A0A1B0GUA6 201 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 FAM237BA0A1B0GVD1 139 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 NLRP11P59045 1033 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 C1QBPQ07021 282 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 CTC1Q2NKJ3 1217 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 SEZ6Q53EL9 994 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 RASIP1Q5U651 963 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 PCGF5Q86SE9 256 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 SH3TC2Q8TF17 1288 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 NRG4Q8WWG1 115 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ALKBH8Q96BT7 664 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ANKEF1Q9NU02 776 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 XPO7Q9UIA9 1087 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 SERPINA10Q9UK55 444 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 AGO2Q9UKV8 859 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 hCG_1818297A0A087WSY0 165 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 NDC80O14777 642 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 CCNE2O96020 404 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 PYGBP11216 843 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 JAK3P52333 1124 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 GDF10P55107 478 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ROR2Q01974 943 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 MCL1Q07820 350 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 RASA2Q15283 850 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 PPP1R15BQ5SWA1 713 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 CWF19L1Q69YN2 538 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 MCF2L2Q86YR7 1114 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 LARGE2Q8N3Y3 721 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 CCDC110Q8TBZ0 833 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 RILPQ96NA2 401 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 TLE6Q9H808 572 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 RBAKQ9NYW8 714 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms