RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 OSTM1Q86WC4 334 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 ST13P5Q8NFI4 369 aaPredicted RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 FAM200AQ8TCP9 573 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 PARD3BQ8TEW8 1205 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 KBTBD7Q8WVZ9 684 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 SYAP1Q96A49 352 aaPredicted RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 CEP295NLQ96MC4 621 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 ZSWIM3Q96MP5 696 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 LPIN3Q9BQK8 851 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 TRMT61BQ9BVS5 477 aaKnown RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 VRTNQ9H8Y1 702 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 GDPD2Q9HCC8 539 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 ZNF334Q9HCZ1 680 aaPredicted RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 TRPV5Q9NQA5 729 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 TMLHEQ9NVH6 421 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 CDH9Q9ULB4 789 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 TRAF3IP3Q9Y228 551 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 GOLGA6L4A6NEF3 574 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 SOBPA7XYQ1 873 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 STK25O00506 426 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 PI15O43692 258 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 CSH1P0DML2 217 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 CSH2P0DML3 217 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 GJA1P17302 382 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 PSMC3P17980 439 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 DDX6P26196 483 aaKnown RBP eCLIP12.38□□□□□ -0.43
RTN3-209ENST00000538995 GABRR2P28476 465 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 MAGEA11P43364 429 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 TNNC1P63316 161 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 ENPEPQ07075 957 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 TRPC3Q13507 836 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 SNW1Q13573 536 aaKnown RBP12.38□□□□□ -0.43
RTN3-209ENST00000538995 SLC44A4Q53GD3 710 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 FAM171BQ6P995 826 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 SPATA2LQ8IUW3 424 aaPredicted RBP12.38□□□□□ -0.43
RTN3-209ENST00000538995 GUF1Q8N442 669 aaKnown RBP12.38□□□□□ -0.43
RTN3-209ENST00000538995 DTWD2Q8NBA8 298 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 PJA1Q8NG27 643 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 TMC2Q8TDI7 906 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 IRF7Q92985 503 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 SYT15Q9BQS2 421 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 PI4K2AQ9BTU6 479 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 MKNK1Q9BUB5 465 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 OSBPL6Q9BZF3 934 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 PLA2G2FQ9BZM2 168 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 XYLT2Q9H1B5 865 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 ATXN3LQ9H3M9 355 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 IL21Q9HBE4 155 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 OBP2AQ9NY56 170 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 FRMD4BQ9Y2L6 1034 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 SIT1Q9Y3P8 196 aa12.38□□□□□ -0.43
RTN3-209ENST00000538995 KANSL1LA0AUZ9 987 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 LRRIQ3A6PVS8 624 aaPredicted RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 CST3P01034 146 aaPredicted RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 ACAT1P24752 427 aaKnown RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 MAGEA9P43362 315 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 FCHO2Q0JRZ9 810 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 WDR72Q3MJ13 1102 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 TDRD10Q5VZ19 366 aaKnown RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 VSTM1Q6UX27 236 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 VITQ6UXI7 678 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 MFSD6LQ8IWD5 586 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 FMR1NBQ8N0W7 255 aaPredicted RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 PLEKHO2Q8TD55 490 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 ZNF516Q92618 1163 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 TRMT2BQ96GJ1 504 aaKnown RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 MYRFLQ96LU7 910 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 MMS19Q96T76 1030 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 TASP1Q9H6P5 420 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 BRD9Q9H8M2 597 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 RMND1Q9NWS8 449 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 UXTQ9UBK9 157 aaPredicted RBP12.37□□□□□ -0.43
RTN3-209ENST00000538995 GTF3C4Q9UKN8 822 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 TCHHQ07283 1943 aa12.37□□□□□ -0.43
RTN3-209ENST00000538995 MYBPHLA2RUH7 354 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 HEPACAM2A8MVW5 462 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 IKBKBO14920 756 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 PHACTR2O75167 634 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 NOL4O94818 638 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 GLULP15104 373 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 HMGA1P17096 107 aaKnown RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 CYP2F1P24903 491 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 RPL13P26373 211 aaKnown RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 VIPR2P41587 438 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 CASP4P49662 377 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 MLLT6P55198 1093 aaPredicted RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 NLRP12P59046 1061 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 MYL6P60660 151 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 FAM160A1Q05DH4 1040 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 BIRC3Q13489 604 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 NCOA4Q13772 614 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 GRM2Q14416 872 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 ZNF699Q32M78 642 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 STXBP5Q5T5C0 1151 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 GPR158Q5T848 1215 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 INTS8Q75QN2 995 aaKnown RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 ARID3BQ8IVW6 561 aaPredicted RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 GIPC2Q8TF65 315 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 MYLPFQ96A32 169 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 MSANTD3Q96H12 275 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms