RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 GABRR2P28476 465 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 GNL1P36915 607 aaPredicted RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 CLCN5P51795 746 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 CCDC142Q17RM4 750 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 GAREM2Q75VX8 874 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 SPATA2LQ8IUW3 424 aaPredicted RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 TMEM105Q8N8V8 129 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 ZSCAN18Q8TBC5 510 aaPredicted RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 TMC2Q8TDI7 906 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 ERCC4Q92889 916 aaPredicted RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 SMARCD2Q92925 531 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 SYAP1Q96A49 352 aaPredicted RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 ELSPBP1Q96BH3 223 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 TIGD1Q96MW7 591 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 PKMYT1Q99640 499 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 SYT15Q9BQS2 421 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 MRPL45Q9BRJ2 306 aaKnown RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 HOOK1Q9UJC3 728 aaKnown RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 CDH9Q9ULB4 789 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 FCARP24071 287 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 RPL13P26373 211 aaKnown RBP22.37■■□□□ 1.17
VPS28-203ENST00000524521 GPR15P49685 360 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 PSMC1P62191 440 aaKnown RBP22.37■■□□□ 1.17
VPS28-203ENST00000524521 ADAM9Q13443 819 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 NFIL3Q16649 462 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 DDR2Q16832 855 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 OR6B3Q8NGW1 331 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 SMARCE1Q969G3 411 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 GSDMAQ96QA5 445 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 PRRX2Q99811 253 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 XYLT2Q9H1B5 865 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 ABCB6Q9NP58 842 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 ARHGEF3Q9NR81 526 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 PCDHA5Q9Y5H7 936 aa22.37■■□□□ 1.17
VPS28-203ENST00000524521 TACC1O75410 805 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 AKAP3O75969 853 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 VNN1O95497 513 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 STAU1O95793 577 aaKnown RBP22.36■■□□□ 1.17
VPS28-203ENST00000524521 FAM163BP0C2L3 166 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 VIPR2P41587 438 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 VAMP7P51809 220 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 RPL10AP62906 217 aaKnown RBP22.36■■□□□ 1.17
VPS28-203ENST00000524521 NCOA4Q13772 614 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 ARHGAP15Q53QZ3 475 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 STXBP5Q5T5C0 1151 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 SDHAF4Q5VUM1 108 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 CWF19L1Q69YN2 538 aaKnown RBP22.36■■□□□ 1.17
VPS28-203ENST00000524521 FAM171BQ6P995 826 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 GPIHBP1Q8IV16 184 aa22.36■■□□□ 1.17
VPS28-203ENST00000524521 KMT2EQ8IZD2 1858 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 IKBKBO14920 756 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 MAPK13O15264 365 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 PI15O43692 258 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 GADD45BO75293 160 aaPredicted RBP22.35■■□□□ 1.17
VPS28-203ENST00000524521 AOC1P19801 751 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 PSMC2P35998 433 aaKnown RBP22.35■■□□□ 1.17
VPS28-203ENST00000524521 PLA2G5P39877 138 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 PRCPP42785 496 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 PFKPQ01813 784 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 GRM2Q14416 872 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 MAPRE1Q15691 268 aaKnown RBP22.35■■□□□ 1.17
VPS28-203ENST00000524521 ZNF699Q32M78 642 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 SLC44A4Q53GD3 710 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 ZNF667Q5HYK9 610 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 GPR158Q5T848 1215 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 ZNF658Q5TYW1 1059 aaPredicted RBP22.35■■□□□ 1.17
VPS28-203ENST00000524521 C4orf50Q6ZRC1 276 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 SCN4BQ8IWT1 228 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 FAM186BQ8IYM0 893 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 PRSS33Q8NF86 280 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 ELMO3Q96BJ8 720 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 GCNAQ96QF7 691 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 TBC1D17Q9HA65 648 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 CRTAC1Q9NQ79 661 aa22.35■■□□□ 1.17
VPS28-203ENST00000524521 MAGEC2Q9UBF1 373 aaPredicted RBP22.35■■□□□ 1.17
VPS28-203ENST00000524521 MAGED2Q9UNF1 606 aaPredicted RBP22.35■■□□□ 1.17
VPS28-203ENST00000524521 KINO60870 393 aaKnown RBP22.34■■□□□ 1.17
VPS28-203ENST00000524521 CSH1P0DML2 217 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 CSH2P0DML3 217 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 KRT13P13646 458 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 CDC25CP30307 473 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 CYP4F8P98187 520 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 ZACNQ401N2 412 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 CFAP221Q4G0U5 840 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 ZCWPW2Q504Y3 356 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 C1orf220Q5T0J3 134 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 INTS8Q75QN2 995 aaKnown RBP22.34■■□□□ 1.17
VPS28-203ENST00000524521 SV2AQ7L0J3 742 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 STKLD1Q8NE28 680 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 FUBP3Q96I24 572 aaKnown RBP eCLIP22.34■■□□□ 1.17
VPS28-203ENST00000524521 SHDQ96IW2 340 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 TRMT61BQ9BVS5 477 aaKnown RBP22.34■■□□□ 1.17
VPS28-203ENST00000524521 TRPV4Q9HBA0 871 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 IL21Q9HBE4 155 aa22.34■■□□□ 1.17
VPS28-203ENST00000524521 A8MXQ7 604 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 HMGA1P17096 107 aaKnown RBP22.33■■□□□ 1.17
VPS28-203ENST00000524521 CDH8P55286 799 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 CYP27A1Q02318 531 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 SGSM1Q2NKQ1 1148 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 EDRF1Q3B7T1 1238 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms