RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TADA1Q96BN2 335 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 ATXN7L3BQ96GX2 97 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 C1orf50Q9BV19 199 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 MYO5BQ9ULV0 1848 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 A0A1B0GTH6 734 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM47DPA6NHR8 397 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 POTECB2RU33 542 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 hCG_1984214I3L0E3 225 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 AIM2O14862 343 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 MCAMP43121 646 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 NSUN2Q08J23 767 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 P3H1Q32P28 736 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ANKRD40Q6AI12 368 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 KCNV1Q6PIU1 500 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM45AQ8TCE6 357 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ZKSCAN4Q969J2 545 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 OTUD5Q96G74 571 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 MNTQ99583 582 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 C12orf4Q9NQ89 552 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 C8orf4Q9NR00 106 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 MRPL39Q9NYK5 338 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF212Q9UDV6 495 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 HBS1LQ9Y450 684 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CARNS1A5YM72 827 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 EVPLLA8MZ36 301 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 SNAP23O00161 211 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 AREL1O15033 823 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CNOT3O75175 753 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RARBP10826 455 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 POLR2EP19388 210 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CIITAP33076 1130 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CASP5P51878 434 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 DGUOKQ16854 277 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 Q3C1V9 767 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 BARGINQ6ZT62 677 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RHPN2Q8IUC4 686 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 SYTL5Q8TDW5 730 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 KLHL32Q96NJ5 620 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 NUDT12Q9BQG2 462 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ZHX2Q9Y6X8 837 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 TNS3Q68CZ2 1445 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ECE2O60344 883 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RPLP2P05387 115 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 JAK1P23458 1154 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ARSEP51690 589 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CDC42EP1Q00587 391 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 AMPD2Q01433 879 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 KNOP1Q1ED39 458 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 EPHA10Q5JZY3 1008 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RWDD4Q6NW29 188 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RNF135Q8IUD6 432 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 KBTBD2Q8IY47 623 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 NDNQ99608 321 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 TUFT1Q9NNX1 390 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 EVA1BQ9NVM1 165 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 MSRAQ9UJ68 235 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ASAP1Q9ULH1 1129 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 BAIAP2Q9UQB8 552 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ZBTB1Q9Y2K1 713 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM32AQ9Y421 112 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 TCHHQ07283 1943 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 SPDYE5A6NIY4 337 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 MYBL2P10244 700 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RALBP11234 206 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CCDC130P13994 396 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 EIF2AK2P19525 551 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RPS6KA3P51812 740 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 PFKFB3Q16875 520 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 SNX30Q5VWJ9 437 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 ATG14Q6ZNE5 492 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 GET4Q7L5D6 327 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 IFNEQ86WN2 208 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 GUF1Q8N442 669 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 GALNT6Q8NCL4 622 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 GIPC3Q8TF64 312 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RAD54LQ92698 747 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 RRN3Q9NYV6 651 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 UVRAGQ9P2Y5 699 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 CORO1CQ9ULV4 474 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 TFR2Q9UP52 801 aa9.08□□□□□ -0.96
LIMCH1-218ENST00000513024 PNMA6FA0A0J9YX94 578 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TMEM120BA0PK00 339 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 MANSC4A6NHS7 340 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TSPAN4O14817 238 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 NMT2O60551 498 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 TARSP26639 723 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 NLRP11P59045 1033 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 RALGDSQ12967 914 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 IMPG1Q17R60 797 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 STYK1Q6J9G0 422 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM180AQ6UWF9 173 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 EEPD1Q7L9B9 569 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 DGKHQ86XP1 1220 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 APPL2Q8NEU8 664 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 LENG1Q96BZ8 264 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 DGCR14Q96DF8 476 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 MMP19Q99542 508 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L15C9J2P7 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L13C9JLJ4 530 aa9.07□□□□□ -0.96
LIMCH1-218ENST00000513024 USP17L11C9JVI0 530 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms